Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1787 ATGGATTCCGATTCAGACTCAGATGGTTCTCATGTCTCTGCTACGCCCCCCAGGGAAGAGCCTCCACCATCCTTGACGGCACAACCACCACCACCGCGGCCAAAACCTGTTCTCGTTCCCAACAAATTTAAACTGTCTTCCTCGTCCAGTGGGAAACCTTCAAAGTCCAAATTACGCCCTTCTAGACCCGCAAAACCGTCGTCCAAACAGGAACCCATTCTAGAAGAATTGCCCTGTAACTCCTTTTGCCTCCCTACTCTGCCCTTCCAAATTCGTCGACCTTCTGACCTTGTCACTCGGTTGTCAACTGCACAGTCCCTTGAAACTCTCCCAGCTGGGTACTTCTCCAAATCTGGGTCTTTCTCAAAAATTCGAAGGCCTTTTCTCAGTTTTACAGATTCTTCTGGAAATGGACCTCCTCTTGATTTTGTATCTAACCCAGGCCTCAAGAACGAGAGTAATGAGAGTTCTTGTCAGCTGGGTGATTCTCTTCCAGTAGAAGTAGAGGGCGAAAGTCTAAGAGCAACTAATTTGTCAAAATTAGGAAAGAGACATCCTAATCTGATAGGAGCTAACGTGCCAGTGCCATCTGTTAAGGTGAGAAAATGTGGCGGTGAGGGAAATTTTGTAAGGTTGAACCTGAATAGCAAGAGGTGGAAGTTGCGGAACAATGGAAAAAAGAAAAATTTTGCATATGGTAAGCGTAGAATCTACAAGAGAGATAAAGTTAAATCGAAGCGTGAAGATCAGGATCAAGTGAAGTCGTTCTTAGAGTCTGAGGGGGAAGCATTTGTTGCCCAGACCGCACAAAAGAAGTCCAGGGATTCTCGTGGTGCCAAAGAATTTGATTGTAAAGTGATTGAAGAGGTGGTTTCAGCTGTTCGAGAAGACCCATCTGATGTGAATCTGGTGAAGTTGCTACAGTTAGTTTATGGCTACGATTCTTTTCGGGATGGTCAATTGGAGGCAATCAAGATGGTACTTGCTGGAAAGTCGACTATGCTTATTTTGCCCACTGGTGCAGGAAAGTCCCTGTGTTATCAGTTACCTGCAATGATTTTACCTGGAATTACCTTGGTCGTCAGTCCATTGGTAGCCTTGATGATTGATCAACAAAGAAAATTGCCTCCTATGATTAATGGAGGACTTCTATGCAGCAGTCAGACACCTGAAGAAGCCTCTGAAACGCTGAAGCATCTTCAAGAAGGTGTATTAAAGGTGCTTTTTGTTTCACCAGAGAGGTTACTGAATGAAGAATTTTTGTCAGTAGTTTCCACTGCTTCAACTGTATCTCTTGTTGTTGTTGATGAAGCCCATTGTATATCTGAATGGTCACACAATTTTCGCCCTTCATTCATGAGGCTTAGGGCATCTTTTCTCCACAACAAGCTCAATGCAGGTTCTTTTCTGGCAATGACAGCAACTGCTACAACCATAACTTTAAATTCTGTCATGTCTGCTTTGGATATTCCTTGCACAAATCTCATCCAGAAGACACAGTTGACAGACAATTTGAATTTATCAGTCTCTTTAGCAAGAAATAGAATGAAAGACTTGTTGGCACTGATCAAGTCTCCTCCATATGTGGAAGCTCAAAGTATCATCATATACTGCAAATTTCAGTCTGAAGCTGATATAATTAGCAAATACTTGAGTGACAACAATATCTCTGCGAAGAGTTATCATAGCAGTATTCCTGCAAAGGAGCGTAGCTATGTACAGGAGTTGTTTGGTTCCAACAAGATCAGAGTGGTTGTTGCAACTGTTGCATTTGGCATGGGATTAGACAAAAGGGATGTTGGAGCTGTAATTCATTACAGTCTACCAGAAAGTCCTGAGCATTATGTTCAGGAGATTGGACGTGCTGGAAGGGATGGGAGGTTGTCCTTTTGCCACCTATTTTATGATGATGAGACATATGCCAAACTCCGTAGTCTAATGTACAGTGATGGAGTAGATGAATATGCAGTGAACAAGTTTCTCTGTGAAGTATTTCCTGCTCACAGGATTTCCAGCGGCCAAATATGTTCCTTGATCAAAGAATCTGCTTCACGGCGGTTTGACATGAAGGAAGAGGTAATGCTGACGCTTTTGACACGCTTGGAGCTGGGTGATGTGCAGTACTTACATTTACTTCCACAGATAAATACCACTTGCACTTTGAGTTTTCACAAGACTCCCCCTTCATTACTTTCCCAAAAGGACTCTGCTATTGCTGCGATACTGAAAAGGTCTGAAAATAAGCAAGGGCTATATGCTTTTGACATGCCCTCTGTGGCTAATGACATGGGAGTTACAGTTGTTGAAATATCAAATCAGTTGCACAATCTAAAGTTGCTTGGAGAAGTAATCTTTGAGATGAAGGACTTGGCCTATTGCTATACAATTGTTCAAGCTCCAACAGATTTTTTTGCGTTGTCAGAAACTCTGACACGATGGTTATATGAGTTTGAAAGATCAAAGGTACGGAAACTGGATGCAATGTATGATGCGGCATATCATGCAGTAAATATTTGTGATAAGACGCCAGGTTGCAGTGGTTCCGATCACACACCATGCTTGCAAAGGAAAATATTAGGTTACTTTGCCGAGGTCGATAATAATTCCTTGTCCAAGACATTGGATCAAAGCAGTCCTTTTTTGCGGGCAGATATAAAGGTCTTTCTACAGCGCAATTCGCAGGCCAAATTCACACCAAGAGCCATTGCAAGGATAATGCACGGCATTGCAAGCCCAGCCTATCCTTCTGCTGTTTGGTCTAAAACTCATTTCTGGGGAAGGTATAGGCATGTAGACTTTCAGGTGGTAATGGAAGCTGCAAAGGAAGAACTTAAGAATTTTGTTGGGAAAGACAGCTCTAGCCATCCAAGATAA 2874 0.4273 MDSDSDSDGSHVSATPPREEPPPSLTAQPPPPRPKPVLVPNKFKLSSSSSGKPSKSKLRPSRPAKPSSKQEPILEELPCNSFCLPTLPFQIRRPSDLVTRLSTAQSLETLPAGYFSKSGSFSKIRRPFLSFTDSSGNGPPLDFVSNPGLKNESNESSCQLGDSLPVEVEGESLRATNLSKLGKRHPNLIGANVPVPSVKVRKCGGEGNFVRLNLNSKRWKLRNNGKKKNFAYGKRRIYKRDKVKSKREDQDQVKSFLESEGEAFVAQTAQKKSRDSRGAKEFDCKVIEEVVSAVREDPSDVNLVKLLQLVYGYDSFRDGQLEAIKMVLAGKSTMLILPTGAGKSLCYQLPAMILPGITLVVSPLVALMIDQQRKLPPMINGGLLCSSQTPEEASETLKHLQEGVLKVLFVSPERLLNEEFLSVVSTASTVSLVVVDEAHCISEWSHNFRPSFMRLRASFLHNKLNAGSFLAMTATATTITLNSVMSALDIPCTNLIQKTQLTDNLNLSVSLARNRMKDLLALIKSPPYVEAQSIIIYCKFQSEADIISKYLSDNNISAKSYHSSIPAKERSYVQELFGSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESPEHYVQEIGRAGRDGRLSFCHLFYDDETYAKLRSLMYSDGVDEYAVNKFLCEVFPAHRISSGQICSLIKESASRRFDMKEEVMLTLLTRLELGDVQYLHLLPQINTTCTLSFHKTPPSLLSQKDSAIAAILKRSENKQGLYAFDMPSVANDMGVTVVEISNQLHNLKLLGEVIFEMKDLAYCYTIVQAPTDFFALSETLTRWLYEFERSKVRKLDAMYDAAYHAVNICDKTPGCSGSDHTPCLQRKILGYFAEVDNNSLSKTLDQSSPFLRADIKVFLQRNSQAKFTPRAIARIMHGIASPAYPSAVWSKTHFWGRYRHVDFQVVMEAAKEELKNFVGKDSSSHPR 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1787 957 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 431 440 IPR002464 -
Alju06g1787 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 442 IPR027417 -
Alju06g1787 957 MobiDBLite consensus disorder prediction 42 56 - -
Alju06g1787 957 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 494 IPR014001 -
Alju06g1787 957 Pfam DEAD/DEAH box helicase 318 477 IPR011545 GO:0003676|GO:0005524
Alju06g1787 957 Gene3D - 286 493 IPR027417 -
Alju06g1787 957 Pfam Helicase conserved C-terminal domain 520 625 IPR001650 -
Alju06g1787 957 PANTHER DNA HELICASE RECQ FAMILY MEMBER 291 803 - -
Alju06g1787 957 MobiDBLite consensus disorder prediction 16 38 - -
Alju06g1787 957 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 521 673 IPR001650 -
Alju06g1787 957 FunFam ATP-dependent DNA helicase Q4 284 494 - -
Alju06g1787 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 644 IPR027417 -
Alju06g1787 957 CDD SF2_C_RecQ 503 635 - -
Alju06g1787 957 SMART helicmild6 545 626 IPR001650 -
Alju06g1787 957 CDD DEXHc_RecQ4-like 304 497 - -
Alju06g1787 957 NCBIfam RecQ family ATP-dependent DNA helicase 306 651 IPR004589 GO:0004386|GO:0006310
Alju06g1787 957 Gene3D - 503 692 IPR027417 -
Alju06g1787 957 FunFam ATP-dependent DNA helicase Q-like 5 502 693 - -
Alju06g1787 957 SMART ultradead3 312 510 IPR014001 -
Alju06g1787 957 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1787 Alju-ChrAlju06 33357465 33368535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1787 535 658 Eukaryotic Initiation Factors Gene Family AT3G19760 32.540 1.38e-15 78.2