Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1725 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATTAACAGGCAGGTGACCTTTGCGAAGCGAAGGAACGGTCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGCGATGCGGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGCAATTATGGAGCACCTGAACCTAATGTTTCTGCAAGGGAAGCCTTGGAGCTAAGCAGCCAACAGGAATACTTGAAGCTGAAGGCTCGTTATGAAGCCCTGCAGCGATCCCAAAGGAATCTTATGGGAGAAGATCTTGGACCCCTAAGCAGTAAAGAACTTGAGTCACTTGAAAGGCAGCTTGATTCGTCCTTGAAGCAGATCAGATCAACACGGACACAATTTATGCTAGATCAGCTCTCTGATCTTCAACGTAAGGAACACTTGCTCGGTGAGGCTAACAGGTCGCTTAGACAAAGGCTGGAGGGATACCAAATAAATCCACTCCAATTGAATCCCACTGCTGAAGAAATGGGATATGGGCGACAACCACTTCAACCTCAGGATGATGGCTTCTTTCATCCCTTGGAGTGTGAGCCAACCTTGCAAATTGGATACCAGGCAGATCCAGTATTAGTGGTTACAGCTGGGCCAAGCATGAATAACTACATGCCAGGAGGATGGTTACCATGA 729 0.465 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLGEANRSLRQRLEGYQINPLQLNPTAEEMGYGRQPLQPQDDGFFHPLECEPTLQIGYQADPVLVVTAGPSMNNYMPGGWLP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1725 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Alju06g1725 242 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Alju06g1725 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju06g1725 242 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju06g1725 242 FunFam MADS-box transcription factor 7 13 98 - -
Alju06g1725 242 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju06g1725 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju06g1725 242 Coils Coil 126 146 - -
Alju06g1725 242 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Alju06g1725 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju06g1725 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju06g1725 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju06g1725 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Alju06g1725 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju06g1725 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1725 Alju-ChrAlju06 27895408 27904510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1725 1 242 MADS-box Gene Family AT1G24260 75.709 6.21e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju06g1725 K-box 4.2e-27 No_clan