Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1724 ATGCTTTTTCCACTGTGCCTTATTCTTGTTGGCCTTTTTCACACCTTGCCTTATTTAAATCACCGGGACGAGGATTTTGCTTCCTCAGGTCACTCAAGGAGTTCTCTGAGGTACAGCTTTGAACTTGAGAGAAACATGGACGGTAAAGTTGTGGGAGACTTGAATGGGAATGGAACATTTGCAGTGGAGTCATCAACAACATGTGGATCATCATCAGTTAAGAGAAGCAGAACACCAAGCAGTGGAATCCAGCAAGTTGCTTCATGTTTGGTTGATGGATGCAATTCTGACCTTAGTAAATGCAGAGACTATCACAGACGGCACAAGGTTTGTGAACTTCACTCTAAGACCCCTAAGGTCACTGTCAGGGGTCAGGAAAAACGCTTCTGCCAGCAGTGCAGCAGGTTCCATTCATTGGAGGAGTTTGATGAAGGAAAGCGAAGCTGCCGGAAACGTCTTGATGGGCACAACCGACGCCGGAGAAAGCCTCCACCGGAACCCCTGTCATTGAACCCAGCAAAATTTCTTGCTGAATACCCAGGTACTGGAATCTTAGCATTCAACAATTCACAAATACTGCCAACAGGGCCTAGTTTGAGCAGTGCTTGGGGTGGGCCTGTTAAAGCTGAGAATAATGATTATTATGTTTCCTTCAAGCTTGATGATGGCAGGAATGGGCCAATTGGTGAAACTTTGAGGAGTGAGCAAGGACTGGGAGGACAGACACAGCTTTCATTTCTTCAAGGCCCTAAACCTTCTACACTCTATGGATATTCTGCCACTGAACTGAACTTAAATTCCAACATGGCATCAGATTATAACAACAACCAGAAAGCATTCTCATATTGTGCTCGCTCTCTTCTGTCATCAATAACACCACATGAGACTAATGAGCTTGGCTTAAGACGCATGATTCTTCCAAATGCTTTGAACATGGATGCTTCAGAAATAGTGAACCATGGCTATGATAATACTACTAATTCTGAGGGGATGATGTTTAGTATAGGATCTGATGGGTCTTCTTCCTCTGCTACTTCCCATAAATACTTCTCGTGGGAATAA 1062 0.4416 MLFPLCLILVGLFHTLPYLNHRDEDFASSGHSRSSLRYSFELERNMDGKVVGDLNGNGTFAVESSTTCGSSSVKRSRTPSSGIQQVASCLVDGCNSDLSKCRDYHRRHKVCELHSKTPKVTVRGQEKRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPPPEPLSLNPAKFLAEYPGTGILAFNNSQILPTGPSLSSAWGGPVKAENNDYYVSFKLDDGRNGPIGETLRSEQGLGGQTQLSFLQGPKPSTLYGYSATELNLNSNMASDYNNNQKAFSYCARSLLSSITPHETNELGLRRMILPNALNMDASEIVNHGYDNTTNSEGMMFSIGSDGSSSSATSHKYFSWE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1724 353 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 57 260 IPR044817 GO:0003677
Alju06g1724 353 Pfam SBP domain 89 162 IPR004333 GO:0003677
Alju06g1724 353 ProSiteProfiles Zinc finger SBP-type profile. 86 163 IPR004333 GO:0003677
Alju06g1724 353 SUPERFAMILY SBT domain 87 168 IPR036893 GO:0003677|GO:0005634
Alju06g1724 353 Gene3D - 80 150 IPR036893 GO:0003677|GO:0005634
Alju06g1724 353 MobiDBLite consensus disorder prediction 153 172 - -
Alju06g1724 353 FunFam Squamosa promoter-binding-like protein 14 80 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1724 Alju-ChrAlju06 27828200 27830804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1724 13 204 SBP-box Gene Family AT5G50670 46.635 2.36e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Alju06g1724 SBP 3e-30 No_clan