Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1654 ATGCAATTCGCAAAGCTCGACGACTCTCCTATGTTTCGCAAGCAGATACAATGCCTGGAGGAGAGTTCAGAATCTTTGAGAGAGAGAAGTTTGAAATTTTACAAAGGGTGCAGAAAATACACTGAAGGACTTGGGGAGGCATATGACGGTGACATTGCATTTGCAAGTGCTTTGGAAACTTTTGGTGGAGGCCATAATGATCCTATCAGTGTTGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATAGCCTTGAGAGAAATTGGGACATACAAAGAAGTCCTTCGCTCACAGGTTGAACATATGCTAAATGACAGATTACTCCAATTTGTGAATATTGACTTGCATGAAGTCAAGGAAGCACGCAAGCGTTTTGACAAAGCCAGTCTTATTTATGATCAGGTTCGTGAAAAGTTCCTCTCTTTAAGAAAAGGCACAAAAACTGATGTAGCTACTGCTCTTGAAGAGGAACTTCATAATGCAAGATCCACTTTTGAGCAAGCTCGATTTAATCTGGTTACTGCTTTGTCAACTGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGCTACTTCAAACAGGGATATGAGTTATTGCACCAAATGGAGCCATATATTAACCAGGTTCTGACATATGCCCAGCAGTCAAGAGAAAGATCCAACTATGAGCAAGCAGCTCTAAATGAAAGAATGCAAGAATACAAAAGACAGGTTGACCGAGAGAGTAGGTGGTCTTCAAATGGTTCTAATGGGTCTCCCAATGGAGATGGTATACAAGCCATCGGCAGAAGTTCACATAAAATGATAGAGGCAGTTATGCAATCTGCTTCCAAGGGAAAGGTTCAAACAATTCGACAAGGTTATCTTTCAAAGCGGTCCTCAAACTTGAGGGGTGACTGGAAAAGGAGGTTTTTTGTTCTTGACAGTCGAGGAATGTTGTATTACTATCGTAAGCAGTGCAGCAAATCTGGGTCTAGCAGTCAACATTCTGGTCAAAGGAATAGTTCTGAGCTTGGTTCTGGCCTTTTGAGCCGATGGCTATCTTCTCATCATCATCACGGTGGGGTACATGATGAAAAATCTGTTGCCCATCACACAGTGAACCTGCTTACATCAACAATCAAAGTTGATGCAGACCAATCAGACTTGAGGTTTTGCTTCAGAATCATTTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATCACAGGTGTTATTGCTTCATTGCTGAGTTCACAGATTCCTGAAAGGTGTCTCCCTGCTAGTCCAATGGGAAGTGGTCATAATAGGTCTGCCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTGTAGAAGAATATAAATCGGACAGAGGTCTTGCTTCTGCACATATGGAACGCCCCTCAAGAAGCTTGCAACAGCAGCAACGAGCATGTATCAAAAGTGAGAAGCCAATTGATGTTTTGCGAAGAGTTTGTGGAAATGATATATGTGCTGATTGTGGGGCGCCTGAACCTGATTGGGCATCATTAAATCTCGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTTCACCGGAATCTTGGTGTACACATATCAAAGGTTAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTGATAAGTTTGTTTCAATCACTTGGGAATACTTTTGCCAACTCAGTCTGGGAGGAAATGTTGCAATCAAGAAGTGCCTTTCAGATTGATCTTGTCCCCACAGGCTTAAGCAAATCCGACAAACCACAGGTTCTCTTCATCAGCAAACCTTGTCAATCTGATTCTTTATCTGTGAAGGAAAAGTTCATCCATGCAAAGTATGCAGAGAAGCTTTTTGTTCACAAGCCAAATGACAATCAATATCGTCTCTTGGTGGCGCAACAGATCTGGGAGGCTGTTCGTTCTAATGACAAAAAAGCTGTGTACCGCCACATTGTTAATTATGAAGTTGATGTTAATGCTGTTTATGAGCAAACATGCAGCTCTTCCTTAACCCTTGCCAAAGTGATGCTATTACAAGAGCAGACAGGCCATGATCACAACTCTGCTTTAGCAGGGAACCCATTCGACTGGTCCTCTACTCTTTTGAATATGGTGGGAGCAAAAGAAGATCCGACCATGAATGATCTTGATGGGTGCACCTTACTTCACCTTGCTTGTGAAACTGCAGATATTGGCATGCTGGAGCTCCTTCTTCAGTATGGTGCAAGTATTAATGCCACTGACATGAGAGGCCAAACACCTCTCCATCGCTGCATTCTCAAAGGAAAATCTACATTGGCAAGATTACTTCTCTCAAGGGGGGCTGATCCTCAAGCTGTGGATGAAGAGGGAAGAACCCCCCTTGATCTTGCTGTGCAGTCAAACTTTGACGACAGTGAAGTGCTTGCTTTATTGTCTGATTCAAACGGATGA 2493 0.4268 MQFAKLDDSPMFRKQIQCLEESSESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLHEVKEARKRFDKASLIYDQVREKFLSLRKGTKTDVATALEEELHNARSTFEQARFNLVTALSTVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSASKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSGSSSQHSGQRNSSELGSGLLSRWLSSHHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERCLPASPMGSGHNRSASESSSFESSDFDHSAVEEYKSDRGLASAHMERPSRSLQQQQRACIKSEKPIDVLRRVCGNDICADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEEMLQSRSAFQIDLVPTGLSKSDKPQVLFISKPCQSDSLSVKEKFIHAKYAEKLFVHKPNDNQYRLLVAQQIWEAVRSNDKKAVYRHIVNYEVDVNAVYEQTCSSSLTLAKVMLLQEQTGHDHNSALAGNPFDWSSTLLNMVGAKEDPTMNDLDGCTLLHLACETADIGMLELLLQYGASINATDMRGQTPLHRCILKGKSTLARLLLSRGADPQAVDEEGRTPLDLAVQSNFDDSEVLALLSDSNG 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1654 830 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Alju06g1654 830 MobiDBLite consensus disorder prediction 447 463 - -
Alju06g1654 830 PRINTS HIV Rev interacting protein signature 513 532 IPR001164 GO:0005096
Alju06g1654 830 PRINTS HIV Rev interacting protein signature 532 549 IPR001164 GO:0005096
Alju06g1654 830 PRINTS HIV Rev interacting protein signature 555 576 IPR001164 GO:0005096
Alju06g1654 830 MobiDBLite consensus disorder prediction 253 269 - -
Alju06g1654 830 MobiDBLite consensus disorder prediction 246 270 - -
Alju06g1654 830 ProSiteProfiles Ankyrin repeat region circular profile. 737 768 - -
Alju06g1654 830 Pfam Ankyrin repeats (3 copies) 742 826 IPR002110 GO:0005515
Alju06g1654 830 Gene3D - 285 438 IPR011993 -
Alju06g1654 830 MobiDBLite consensus disorder prediction 441 463 - -
Alju06g1654 830 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 647 - -
Alju06g1654 830 Coils Coil 151 171 - -
Alju06g1654 830 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Alju06g1654 830 Gene3D - 645 827 IPR036770 -
Alju06g1654 830 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Alju06g1654 830 SMART arf_gap_3 501 646 IPR001164 GO:0005096
Alju06g1654 830 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Alju06g1654 830 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Alju06g1654 830 CDD BAR_SFC_plant 14 215 IPR035670 -
Alju06g1654 830 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Alju06g1654 830 CDD ArfGap 504 633 - -
Alju06g1654 830 Pfam Putative GTPase activating protein for Arf 504 641 IPR001164 GO:0005096
Alju06g1654 830 SMART ANK_2a 770 799 IPR002110 GO:0005515
Alju06g1654 830 SMART ANK_2a 737 766 IPR002110 GO:0005515
Alju06g1654 830 SMART ANK_2a 803 830 IPR002110 GO:0005515
Alju06g1654 830 SUPERFAMILY PH domain-like 207 427 - -
Alju06g1654 830 ProSiteProfiles Ankyrin repeat profile. 770 802 IPR002110 GO:0005515
Alju06g1654 830 ProSiteProfiles ARF GTPase-activating proteins domain profile. 501 646 IPR001164 GO:0005096
Alju06g1654 830 Pfam PH domain 294 427 IPR001849 -
Alju06g1654 830 SUPERFAMILY ArfGap/RecO-like zinc finger 501 641 IPR037278 -
Alju06g1654 830 Coils Coil 227 247 - -
Alju06g1654 830 Gene3D Arf GTPase activating protein 481 644 IPR038508 -
Alju06g1654 830 CDD PH_ACAP 295 432 - -
Alju06g1654 830 PANTHER CENTAURIN/ARF 3 828 IPR045258 GO:0005096
Alju06g1654 830 SMART PH_update 293 430 IPR001849 -
Alju06g1654 830 ProSiteProfiles Ankyrin repeat profile. 737 769 IPR002110 GO:0005515
Alju06g1654 830 ProSiteProfiles Ankyrin repeat region circular profile. 770 802 - -
Alju06g1654 830 Coils Coil 118 138 - -
Alju06g1654 830 SUPERFAMILY Ankyrin repeat 657 818 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1654 Alju-ChrAlju06 23153723 23163234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1654 513 643 C2H2 Transcription Factor Family AT4G21160 42.424 7.27e-21 93.2