Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1627 ATGGCAATACCTTGTGAGCTTAGCCTGGATTGCAAACCCCACCACAGCTTTTCCATGCTTCTCAAACCTTTTCGACACCATAATCAGTCTGATGACACTCACAACCTCACGCTGGAAGAATTCGTCTCTCGCCTCGAAGAAGAACGCCTCAAGGTCGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTTCTCACCAACGCAATGGAGGAGTCAAGGCAGAAACTCGAGGCTTTGAGAGGAAATGAAGGCAAGAAAAGTGCAACTCTTGAAGAATTCATACCCTTAAAGCATTCAACTTTTGAAAGCTCTGATAAAGCATCAACCAATAATAATAATTGTGATAAAGGTAGTTGGATGATTTCTGCTCAGCTATGGAGCCAAGCTAATGACGAAAACAAGCCACAGTATTCCACAATTCCATCGCTTAGTAACAATAAAGAAGCAGATGATCATCAGATTGTTGGGTTTGATGTTAACCCTAATAAGCTTCGCAGAAATATCAATGGTGGAGCCTTTCTTCCATTCACAAATAATAAGGAACGAAATAGATCGAACCAGTTTTCTTCGTCGACGCTATTGCAGGCTCTTCCGGAGCTGGCACTTGCCTCTGCTGATGAGAAACAAGCGGAGGAGGATAAGAAATTATACTCAGAGACGATTGAGAATTCTGGTAAAGGAGGAAGCAATGATAATAATAATAATGGTGGTGATCAAGAAAAAGGGGTTACCGTAGTTTCGTCGTGTGAGGCGAAAACAACCGGTAAAACTGCTGCTTTGACGTCCACCGGTACTACGCAAAGTCATCGGAAAGCAAGAAGGTGTTGGTCGCCGGACTTGCACCGGCGATTTGTGAATGCTCTTCAGATGCTTGGTGGATCTCAAGTGGCCACCCCAAAACAGATTAGGGAGCTGATGAAGGTTGACGGATTAACCAATGATGAAGTTAAAAGTCATCTCCAGAAATATCGTCTCCACACAAGACGACCCGGTCCAAACCCGCAAGTAGGTGGGGCAGGTGCCCCTCAGCTCGTAGTTTTAGGAGGAATCTGGGTCCCACCCACAACAGGCACCCCTAACGCGCTCTTCAGCTCACACCCAGTCTCTCATGCGCCGCCACTACACTACTTCCCTCACGCCCCTCCGCCCCAAGACTTGATGTACACAGCCTCAACACCACAACCACACAAGCACACCCTCCACCACCTCAATGGGGTACAAAACGACGTCGCAGAGGCAGAGGTCGCCGGAATCAGAGACCATAGAAGTAGTAGTGAGAACCAAAGGGAAGAGAGTAAAGGCGGTAGTACCATAAGCCTCAGACTGTAG 1332 0.4737 MAIPCELSLDCKPHHSFSMLLKPFRHHNQSDDTHNLTLEEFVSRLEEERLKVDAFKRELPLCMQLLTNAMEESRQKLEALRGNEGKKSATLEEFIPLKHSTFESSDKASTNNNNCDKGSWMISAQLWSQANDENKPQYSTIPSLSNNKEADDHQIVGFDVNPNKLRRNINGGAFLPFTNNKERNRSNQFSSSTLLQALPELALASADEKQAEEDKKLYSETIENSGKGGSNDNNNNGGDQEKGVTVVSSCEAKTTGKTAALTSTGTTQSHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPGPNPQVGGAGAPQLVVLGGIWVPPTTGTPNALFSSHPVSHAPPLHYFPHAPPPQDLMYTASTPQPHKHTLHHLNGVQNDVAEAEVAGIRDHRSSSENQREESKGGSTISLRL 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1627 443 MobiDBLite consensus disorder prediction 420 443 - -
Alju06g1627 443 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 27 402 IPR044787 GO:0003700|GO:0006355
Alju06g1627 443 NCBIfam myb-like DNA-binding domain, SHAQKYF class 272 327 IPR006447 GO:0003677
Alju06g1627 443 Coils Coil 63 83 - -
Alju06g1627 443 MobiDBLite consensus disorder prediction 222 242 - -
Alju06g1627 443 Gene3D - 271 329 - -
Alju06g1627 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 269 329 IPR017930 -
Alju06g1627 443 FunFam Myb family transcription factor 271 329 - -
Alju06g1627 443 Pfam Myb-like DNA-binding domain 274 325 IPR001005 -
Alju06g1627 443 MobiDBLite consensus disorder prediction 223 242 - -
Alju06g1627 443 SUPERFAMILY Homeodomain-like 270 330 IPR009057 -
Alju06g1627 443 Coils Coil 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1627 Alju-ChrAlju06 22167965 22170651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1627 1 355 G2-like Transcription Factor Family AT2G03500 49.725 2.64e-97 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Alju06g1627 Myb_DNA-binding 9.4e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g1627 06 22167965 22170651 Alju13g1296 13 31659462 31661764 CCT
Alju06g1627 06 22167965 22170651 Alju06g1627 06 22167965 22170651 ECH