Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1619 ATGAAGAGAAAACTGCATGCTTCTGCTAGGGCATTTCAGCTTGAGGGAAATGTCTCAACAGATCCTGTAGCTATAGATGCTCCAAGCGGTTTTCTTTTGGAGTGGTGGTCTGTCTTCTGGGACATATTTATTGCCAAAACTAACAGGAAAGACCAAAATCACTCGGAAGCTGCATTATCTTACATTGAGACTCTACAAACTAAGACTAGAGAGATGCAGAAGCAACAAGAGCATCAAAAACCCAATCAGCATCAACAAATGCAAATGCAGCAACTTTTGCAGAGGCATGCCCAACAGCAACTACAGCCACAGCAACAGCAATGTAGGGGTGGGACCCAAGTCGTCAGAGATAGTACCGCTGGTCCTCTTGGCAACAATCCTTTGATGAGGCAGAACCATGCAACTGTAAATGCCATGGCAACAAAAACATATGAGGAGACGTTGAAATTTCCTCTCCAGGGAGAAGCCTTAGATAATGCGCCTGCCAGGCAAAAGATTGGCGGTGCTGCAGGTCAACTTGTCAGACCAATTAAGGCCTCATTGTTGAAAGCAACAGCAGCAGCTACAACAGCAACTGTTGGACATCCTGCAGGTGAAACACTGCATGGTGCACCTAGGGGTTTACCAGGGAATCTTCCACATGTTCAGAGTTGCAACCAGCAACTTGCAGGATTGAATCAAGGCGGCAGTAGCAGTATGACTCTGAAAGGATGGCCTCTAGCGGGACTGGATCAGCTTTGCTCTGGGTTTCTCCCGCAGAATGCTTTAATGCAGTCTCCAGAGTCATTCAATCAACTTTCACTGCAGCAGCAACTTATGCTCCAAGCACAACAAAATTTAGTTGACACATCTGTCAACAATCTGGATAGCTGGACACTTAAAAAGCTTCTTAATAATCAAAATATGGGTCCTGAGAAAGATGGCATTCCGAATCCTTTTGGTGCTTTAGTTCCTAGTATTGCAACATCTGTTCATGATTTGCCTGACAATACGTCATTTAAGCAGCAAGTGCAGCAGAGCAGTGAACAAGTTCAACAATATTCACATTATATTCTTTCTAGCCGGCAGTCTCAGAATCTCGAGCAGCAAGGCAAAATGGTTGGCACTGGCAGCATTCCTAATATGCTTCAAGGAAATGACCAGGGTTCCAAAAGTCATAGTGCGCGAAAGCGAAAGCAAGCATCATCTTCTGGTCCTGCCAATAGTTCTGGAACTGCAAACACCACAGGGCCTTCCAGTAATTCACCGGCAACACCTTCTACACAAACAGTAGATGTGATGTCAGTGTCGGCTCTGCAACAAAATGTTCCTTTGTCCAAGTCACCCCTTATGTATGGTTCTGATGGTCTGGGCTCATTCACATCAGCACAGAATCAAATGGAAGATATGGACCATCTTCTAGCTGATGGATCTTTGGGTGACAATGCTGAGTCATTCTTATCTCCTGATGATGCAGACCCTAGAAGTAGATCTGGGAAAGGATTCTCGTTCAAGGAGATCAATCATATAATGGCAAGTACACATCAAATTGAATGCTGCCACTTCTCATCTGATGGAAAGTTGCTTGCTACTGCTGGGCATGATAAAAAGGCTTCATTGTGGTGCACTAACTCATTGGATTTGAAGCTGACACTTGAAGAGCACACTGAATGGATAACTGATGTTCGATTTAGTCCCAGCATGTCACACATTGCTACATCCTCAGCTGACAAAACTGTTAGGGTTTGGGATGTTGATAATCCTGTTTGTTCGCTCCGTACATTCACTGGACACTCAACAACTGTCACGTCACTGGACTTTCACCCTTGTAAAGAGGACCTTATCTTCTCTTGTGATAATCATAATGAGATAAGATACTGGAGTATCAAGAATGGTGGTTGTGCTGGGGTTATAAAGGTTGGTGCTACGCAGATGAGATTTCAACCTTCAGGAACGCTTCTTTCTGCCGCAGCTGATAATTATATATCTGTTATTGACATTGAACATCCGTTTCAGAGATTTACATTACAGGGCCATAAAAACCCTGTCCGTTCTCTGTGCTGGGATTTTTCTGGAGAATATTTGGCATCTGTGAGTGATAACTTGGTTAGAGTGTGGAAAGTGAAATCTGGTAAAGGGGAATGCATTCAAGAGTTGAATGCATCCGGCAAGCAATTCAACGCTTGTGTTTTCCATCCTTCCTATCCTTTGTTGATTATTGGCTGCCATGAGACTCTTGAGCTCTGGTACTTAAGTGAGAACAAGACAATGTCCATACATGCACATGACAATCTTGTATCTTCTTTGGCTGCATCAAATGCTGGGTTGGTGGTCTCAGCTAGTCTGGATAAACACGTCAAAATTTGGAAGTGA 2352 0.4388 MKRKLHASARAFQLEGNVSTDPVAIDAPSGFLLEWWSVFWDIFIAKTNRKDQNHSEAALSYIETLQTKTREMQKQQEHQKPNQHQQMQMQQLLQRHAQQQLQPQQQQCRGGTQVVRDSTAGPLGNNPLMRQNHATVNAMATKTYEETLKFPLQGEALDNAPARQKIGGAAGQLVRPIKASLLKATAAATTATVGHPAGETLHGAPRGLPGNLPHVQSCNQQLAGLNQGGSSSMTLKGWPLAGLDQLCSGFLPQNALMQSPESFNQLSLQQQLMLQAQQNLVDTSVNNLDSWTLKKLLNNQNMGPEKDGIPNPFGALVPSIATSVHDLPDNTSFKQQVQQSSEQVQQYSHYILSSRQSQNLEQQGKMVGTGSIPNMLQGNDQGSKSHSARKRKQASSSGPANSSGTANTTGPSSNSPATPSTQTVDVMSVSALQQNVPLSKSPLMYGSDGLGSFTSAQNQMEDMDHLLADGSLGDNAESFLSPDDADPRSRSGKGFSFKEINHIMASTHQIECCHFSSDGKLLATAGHDKKASLWCTNSLDLKLTLEEHTEWITDVRFSPSMSHIATSSADKTVRVWDVDNPVCSLRTFTGHSTTVTSLDFHPCKEDLIFSCDNHNEIRYWSIKNGGCAGVIKVGATQMRFQPSGTLLSAAADNYISVIDIEHPFQRFTLQGHKNPVRSLCWDFSGEYLASVSDNLVRVWKVKSGKGECIQELNASGKQFNACVFHPSYPLLIIGCHETLELWYLSENKTMSIHAHDNLVSSLAASNAGLVVSASLDKHVKIWK 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1619 783 MobiDBLite consensus disorder prediction 356 383 - -
Alju06g1619 783 MobiDBLite consensus disorder prediction 392 421 - -
Alju06g1619 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 503 534 IPR001680 GO:0005515
Alju06g1619 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 588 625 - -
Alju06g1619 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 752 783 IPR001680 GO:0005515
Alju06g1619 783 PANTHER TRANSCRIPTION ACTIVATOR MSS11 66 228 - -
Alju06g1619 783 Pfam WD domain, G-beta repeat 749 783 IPR001680 GO:0005515
Alju06g1619 783 Pfam WD domain, G-beta repeat 585 617 IPR001680 GO:0005515
Alju06g1619 783 Pfam WD domain, G-beta repeat 543 577 IPR001680 GO:0005515
Alju06g1619 783 Pfam WD domain, G-beta repeat 506 534 IPR001680 GO:0005515
Alju06g1619 783 Pfam WD domain, G-beta repeat 668 700 IPR001680 GO:0005515
Alju06g1619 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 545 580 - -
Alju06g1619 783 SUPERFAMILY WD40 repeat-like 508 783 IPR036322 GO:0005515
Alju06g1619 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 752 783 - -
Alju06g1619 783 MobiDBLite consensus disorder prediction 69 129 - -
Alju06g1619 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 630 IPR001680 GO:0005515
Alju06g1619 783 MobiDBLite consensus disorder prediction 356 421 - -
Alju06g1619 783 ProSitePatterns Trp-Asp (WD) repeats signature. 564 578 IPR019775 -
Alju06g1619 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 669 705 IPR001680 GO:0005515
Alju06g1619 783 Gene3D - 633 783 IPR015943 GO:0005515
Alju06g1619 783 CDD WD40 499 783 - -
Alju06g1619 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 580 IPR001680 GO:0005515
Alju06g1619 783 SMART WD40_4 662 700 IPR001680 GO:0005515
Alju06g1619 783 SMART WD40_4 624 659 IPR001680 GO:0005515
Alju06g1619 783 SMART WD40_4 705 743 IPR001680 GO:0005515
Alju06g1619 783 SMART WD40_4 581 621 IPR001680 GO:0005515
Alju06g1619 783 SMART WD40_4 496 535 IPR001680 GO:0005515
Alju06g1619 783 SMART WD40_4 538 577 IPR001680 GO:0005515
Alju06g1619 783 SMART WD40_4 745 783 IPR001680 GO:0005515
Alju06g1619 783 Gene3D - 471 632 IPR015943 GO:0005515
Alju06g1619 783 MobiDBLite consensus disorder prediction 79 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1619 Alju-ChrAlju06 21647358 21655980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1619 499 742 Miscellaneous Gene Families AT5G08390 25.098 1.18e-18 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Alju06g1619 WD40 0.076 CL0186