Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1587 ATGCAGCAATCTGCAGCCAATCATTGTCGTTATCTTCCTCCTTTCTTTAGTCAATATTTCCGTCAGCCCTTGAAGCTGCTCTTAGTGGGCACTGATCATGCTACCCAAACTAGTATTCAGACGTATCTTCCAACATCTTATTATAAAATCACTGCGTGTGACAGTGGTCTTGGTGCCCTAAGATACTTACGAGAGAAAGGACCTGATTCTTTTGACTTGGTTCTCAGTGATATCGCCTTGAAAGACATAGATGGCTACCAGTTCATCAGAGAGCAACAGTTGAACCCAAATATTGCCCACGTTGCAATATGTGGGGGTGAAAGATCAACTGATGAGATCCTGACAGCATATAGAAGTGGTGCTTGCAGTGTTTTGTGGAAACCAGTGAGTGAGTTGGGCGATGAGATTGGAAATTTATGGAGACATGTTTGTAGGAGGAGGGAACAGCATGAGAGGACGTCCAAGACTCATGACGCTGAACAACAGAATCAGAATAAGGGTTCTTCTTCTTCTTCTCTATCATCCAAAGACACAAGTCTGGAAGAAGATGATTACCTTGAGTTTGTGAATCATGGCGGAGAACCTGCTTCGATAAAACGAAGGCGGGTATCCTGGAAGGACATCCATCCGTTATTTGTTAATGCTGTGAATCAACTTGGCGGCCCTGAAAATGCAAAGCCAAGACAGATTATTGAAATAATGAAAGTGCCTGGTCTAACGAGAGCACATGTTGGTAGTCACTTACAGAAATATAGAGAAAGATTAAAGAGAATGGAGGAAGAGCAGCAGCATTACTCAGTTTCTCACATGAATGGATCCCTTTTCACGATGGAACCCCATCTTTATAAGTACCACCTTGCTCGCCAGCCAATACAAATGCAAATACAACCACCTGAACAAAGCTTCAACAACTTTGGTCATGTGGTTCCAGCTTTAGGCTCTTATTATTATATTACTGCTACGGGAGGTGATAATAATGATGGAATCATAAATCAAAAACAAGCCCCGGGTACTTCATTTGGAAGTAATATGCAGCAGCAACCACATATTGGTACTTCCTTTGGGAGTAATCAAAACCTGACTTATGGTGTGGAACAACCTGATCAAGACCCATCTTCAGGTTCTTCTTCTTATGTTAGTACTGCTAGAGGTGCTAATAATGATGGAACCATGAATCAAAATCAAGCTATTTCCTTTAAAAGTAAGATGCTGCAGCAACCACAAATATCACAAGATCAAAATCTAGAAGCAGGCGGTCATGATGGAATCATCAATCCAGAAGCAGGCGGTCATGGTGGAATCATCAATCCAGAAGCAACACATGTTACCGAGGATCATGGGGAATTTGACTTCTTGAATACGCAATCATTTCAAGACCTGGAAAAAATTTTTGAATTATTGGATGATTATGAGCCATCACTTCAAGAGTTTGAATAG 1437 0.4141 MQQSAANHCRYLPPFFSQYFRQPLKLLLVGTDHATQTSIQTYLPTSYYKITACDSGLGALRYLREKGPDSFDLVLSDIALKDIDGYQFIREQQLNPNIAHVAICGGERSTDEILTAYRSGACSVLWKPVSELGDEIGNLWRHVCRRREQHERTSKTHDAEQQNQNKGSSSSSLSSKDTSLEEDDYLEFVNHGGEPASIKRRRVSWKDIHPLFVNAVNQLGGPENAKPRQIIEIMKVPGLTRAHVGSHLQKYRERLKRMEEEQQHYSVSHMNGSLFTMEPHLYKYHLARQPIQMQIQPPEQSFNNFGHVVPALGSYYYITATGGDNNDGIINQKQAPGTSFGSNMQQQPHIGTSFGSNQNLTYGVEQPDQDPSSGSSSYVSTARGANNDGTMNQNQAISFKSKMLQQPQISQDQNLEAGGHDGIINPEAGGHGGIINPEATHVTEDHGEFDFLNTQSFQDLEKIFELLDDYEPSLQEFE 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1587 478 Coils Coil 241 268 - -
Alju06g1587 478 NCBIfam myb-like DNA-binding domain, SHAQKYF class 201 254 IPR006447 GO:0003677
Alju06g1587 478 MobiDBLite consensus disorder prediction 151 176 - -
Alju06g1587 478 SMART REC_2 24 136 IPR001789 GO:0000160
Alju06g1587 478 ProSiteProfiles Response regulatory domain profile. 25 142 IPR001789 GO:0000160
Alju06g1587 478 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 150 431 IPR044841 GO:0003700|GO:0006355
Alju06g1587 478 MobiDBLite consensus disorder prediction 414 438 - -
Alju06g1587 478 Gene3D - 197 259 - -
Alju06g1587 478 SUPERFAMILY CheY-like 22 152 IPR011006 -
Alju06g1587 478 MobiDBLite consensus disorder prediction 160 176 - -
Alju06g1587 478 FunFam Two-component response regulator 196 259 - -
Alju06g1587 478 Pfam Response regulator receiver domain 27 130 IPR001789 GO:0000160
Alju06g1587 478 Gene3D - 25 178 - -
Alju06g1587 478 MobiDBLite consensus disorder prediction 328 392 - -
Alju06g1587 478 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1587 Alju-ChrAlju06 20504045 20506623 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1587 24 258 Response Regulator Gene Family AT2G25180 32.231 6.19e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju06g1587 Response_reg 7.2e-11 CL0304