Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1545 ATGGCTTGGTTTAATGGTGGTAACTTCTCGACCGAGAAGTCGGTTCGCCCGACTCGTCTCTGCTACGTTCCTCCTCACTGCAGGAACAATGGCATGCTTGATTTCAACAATGTGAACTCGTTCATGTCGGGAAATGGGTCGTCAGCTCAGTCTAGCTTCGCTTCCTTCAACTCTTACAGTTCCAGACGACAAGCTAGGGGTGGTGGTGCGAGTAACGGCCGTTTTGGTGGTCGTGGTCGTGGTAGTGGAGGCCGGAGGTTTGGTCGACCGGAGGAGACTGATGAGCGGAACCATTACCAGAATCGGAACGGTTTTGGGATTCCTGACACGCTTGACACTACAGAGAGTTTTGGAGAAGATGGCGATGTCTGTGGTGGTATCAATTTTGACGCATACGAAGATATTCCAGTGGAGGTCAGTGGTTCCGACGTACCCCCGCCGGTCAGTACCTTCGCAGAAATAGAGCTGAGCGAGGGTTTGAACAAGAATATCAAGCGATGCAAGTACGTCAAACCCACTCCGATTCAGCGTCATGCGATTCCCATCGCCGTTGCTGGTCGCGACTTGATGGCTTGTGCTCAGACCGGGTCAGGGAAGACGGCGGCGTTCTGTTTCCCGATTATTTCTGGGGTTTTGAAGGATCGTTCTAGGTTTTTGCCTACTGCTCGTGAAGGTTGGATTGCTTATCCCACTGCGCTTATAATGTCACCAACTAGGGAGTTGTCATGTCAGATTCATGATGAGGCCAAGAAGTTCGCTTATCAGACCGGAGTGAAGATTGTTGCTGCTTATGGTGGGGCCCCGATTGCTCAGCAGTTTCGTAATTTAGAAAAAGGGGTGGACGTCTTAGTTGCAACTCCTGGGCGCCTAGTTGATATGATTGAGAGAGGCAGGGTTTCACTCACACGAACAAAATTCCTTGCGCTTGATGAGGCAGATCGCATGTTGGACATGGGCTTTGAGCCTCAAATTCGGAAGATTGTTGAGCAAATGGATATGCCTCCACCAGGTGCTAGACAGACTATGCTCTTCAGCGCTACGTTCCCAGAGGATATACAGAAGCTGGCTGCGGACTTTCTTTCAAATTACATATTCTTAGCAATTGGAAGAGTTGGTTCCAGCACTGAATTGATTATACAAAAAGTTGAACTTGTTCAGGATATGGACAAAAGAGACCATCTTTTGGATCTTCTCCGTTCTCAAAGGAAAGCTTTGACTCTAGTATTTGTTGAAACAAAAAGAGGAGCAGATGCTTTGGAAAATTGGCTGTCGAGAAAAGGTTTTCCAGCTATTGCGATACATGGAGGAAATGTTATTGTAATGATCCATGCGCTTGCCAAAAAGGAGAGGGAAAGCGCCTTGAGATCTTTCAAAAGTGGTGCTCGGCCTATTTTGGTCGCAACTGATGTTGCTTCAAGGGGTTTAGACATACCACATGTGGCTCATGTTGTCAATTTCGACTTGCCGAAAGATATAGATGGCTATGTTCACAGAATTGGCCGAACTGGTCGTGCCGGCAAGTCTGGTTTGGCCACTGCTTTCTTCAGTGACAAAAACATCCCTCTTGCAAATGCCCTTGTTGAACTTATGCAAGAATCAAACCAAGTGGTTCCCTCTTGGCTCACTCAATATGCAGCAGAGAGTTCTTCATACCATATCCATAGCAGCAAAAGGGGCCAGTGGTATGGTAATGGCAAGTATGGCGGCCATGACTTCAGAAATATAACTCAACATGAAGAAGGGTATCACAACCACTCAGTGGATGCAGGTTTTGCAGAGAACTATGGCACTATAACTGCAGCTTATGACATATCTGATTCTTACAATGACTCTTGTGATATAGCCAACACAGTTCCTGCTACTAGCAGCAATTACCATTCCAGTGATGCCGGCGATTATTATGGAGGCGGGAGGGCTAACGGGCCAAACGGGTATGTATCCGTTGTTCCTACTGGATGGGACTAG 1965 0.4748 MAWFNGGNFSTEKSVRPTRLCYVPPHCRNNGMLDFNNVNSFMSGNGSSAQSSFASFNSYSSRRQARGGGASNGRFGGRGRGSGGRRFGRPEETDERNHYQNRNGFGIPDTLDTTESFGEDGDVCGGINFDAYEDIPVEVSGSDVPPPVSTFAEIELSEGLNKNIKRCKYVKPTPIQRHAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGVLKDRSRFLPTAREGWIAYPTALIMSPTRELSCQIHDEAKKFAYQTGVKIVAAYGGAPIAQQFRNLEKGVDVLVATPGRLVDMIERGRVSLTRTKFLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPEDIQKLAADFLSNYIFLAIGRVGSSTELIIQKVELVQDMDKRDHLLDLLRSQRKALTLVFVETKRGADALENWLSRKGFPAIAIHGGNVIVMIHALAKKERESALRSFKSGARPILVATDVASRGLDIPHVAHVVNFDLPKDIDGYVHRIGRTGRAGKSGLATAFFSDKNIPLANALVELMQESNQVVPSWLTQYAAESSSYHIHSSKRGQWYGNGKYGGHDFRNITQHEEGYHNHSVDAGFAENYGTITAAYDISDSYNDSCDIANTVPATSSNYHSSDAGDYYGGGRANGPNGYVSVVPTGWD 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1545 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 522 IPR027417 -
Alju06g1545 654 SMART ultradead3 168 381 IPR014001 -
Alju06g1545 654 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 109 545 - -
Alju06g1545 654 FunFam ATP-dependent RNA helicase RhlB 369 549 - -
Alju06g1545 654 MobiDBLite consensus disorder prediction 84 99 - -
Alju06g1545 654 FunFam Probable ATP-dependent RNA helicase DDX4 114 368 - -
Alju06g1545 654 MobiDBLite consensus disorder prediction 60 112 - -
Alju06g1545 654 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 545 IPR001650 -
Alju06g1545 654 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 149 177 IPR014014 GO:0003724
Alju06g1545 654 Gene3D - 115 368 IPR027417 -
Alju06g1545 654 CDD SF2_C_DEAD 378 515 - -
Alju06g1545 654 SMART helicmild6 417 506 IPR001650 -
Alju06g1545 654 Pfam Helicase conserved C-terminal domain 389 506 IPR001650 -
Alju06g1545 654 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 366 IPR014001 -
Alju06g1545 654 Gene3D - 369 549 IPR027417 -
Alju06g1545 654 CDD DEADc_DDX3_DDX4 150 372 IPR044763 GO:0003724|GO:0005524
Alju06g1545 654 Pfam DEAD/DEAH box helicase 173 355 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1545 Alju-ChrAlju06 19057644 19061293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1545 131 522 Eukaryotic Initiation Factors Gene Family AT3G19760 32.061 6.39e-59 202