Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1530 ATGGACGAAGATTTGCTTAAGCGAAGCACCGATTGCGTCTATTTCTTGGCTTCCCCTCTCACTTGCAAGAAGGGGGCTGATTGTGAGTACCGGCATAATGAAATTGCAAGGCTAAATCCAAGGGATTGCTGGTACTGGTTATCTGGGAGCTGCCTTAATCCAACATGTGCTTTTAGACATCCTCCATTGGAAGGGCATACTGGAGTGCCATCTGAGCCTACACAATCTTCTTTACCTGCAAACAAGACAGTTCCCTGTTATTTTTTCTTCAATGGATTTTGCAATAAAGGTGACAGATGCTCATTTTTGCATGGGCCTGATTGTAGCTCTTTTCCTGGTAAGCCTGGGAAGAATGACTCTGGAAGCAATGATGCCCTGCCCAATGATGCCCTTCCCCTAGAAAATAAAACATCATCTGGAAATAAAGCAGGTGTAGCAATAACAACTGAGACATATCCTGATCCATCTGAAATTTCCCCAAAGGCCCTGCATAATTGTAAAATTGACCCTGTTGAAGATCCTCAGCGATCAGTACAAAAAAATGTTAAACAGCAAAATACTTTGCGGGAGATATCTGATTACGAATATAAAGAAGACACTGTTATAAGGTCTGACTCTGTATCTTTACAGAAAGACTATGTTTATAGCATTTCCCATGTATGCACTGATCTGAGTACAGATGAACATGTGTATAAACATATGGAGCCTGAGGAACGATTGGAATCGTCCCCTGGATTTGATGTTCTTGTTGATGATGAAATGGAGGACCCGGCCTATGAGGATGATTCTGAATATATACCAGTTGATGGCGAACACAGGGAATTGAACGGGCAGTACTTGCAGTACGAATTTAAAGACACTGTAGAGTTTGACCCTGAATGCTCTGAAGCTGACATTATGGATGAAGAGATGTATGGTGGCCGCAGATTTATGGGTGATCATATTCTTGCCGATGACAGAAAAGTTCCTGCTTTTTCCAGAGAGAGAATCATAGACTCTATAATGTCCAGGAAGAGGATTCAGATGCCTGCTGAAATGACTGCTTGTGACAGGAACTTAGATCTTCGAGACCATCTGAGTAGGCGAAGGGAAATTAATGGTAGGCCTGTTACAGGCTTTTTAAGAAGACGGGAACCACCTTTTCTGATGATTCAGAACCGAGAAAGGCTGAGAAGACATGGTGTTGATCAGCGGCTTAGTAGACGGTTAACGTCTGAGGTGGGATTTAACATTATAGACTCAAATGGAGAGGTTGAAACTCGTTCAATTTCTAATAGTCACAGGTTATTTAGGCACCCTCTGCAACATTCACCAAGGAGGATGCAGCATTATAGAGAAAACCGTAAACAGCTGTTTCTACCATCTAAAATCTTCAGGAAACCATTTGCAAAGCGAAGGCGATATACTCCCACGTCTACCGATACCGCATTCCACGGACCTAAGACTCTAGCAGAAATTAAACAAGAGAAGGCGGCAGCTGCAGAAAGAGGACTTTTCAAAAGTACTTCAGCTGATTTCCAGGATCCCAAACCACTAAGTGAAATTCTCAAGGACAAGAAGAGGTTGGATTGTGAATGA 1578 0.4259 MDEDLLKRSTDCVYFLASPLTCKKGADCEYRHNEIARLNPRDCWYWLSGSCLNPTCAFRHPPLEGHTGVPSEPTQSSLPANKTVPCYFFFNGFCNKGDRCSFLHGPDCSSFPGKPGKNDSGSNDALPNDALPLENKTSSGNKAGVAITTETYPDPSEISPKALHNCKIDPVEDPQRSVQKNVKQQNTLREISDYEYKEDTVIRSDSVSLQKDYVYSISHVCTDLSTDEHVYKHMEPEERLESSPGFDVLVDDEMEDPAYEDDSEYIPVDGEHRELNGQYLQYEFKDTVEFDPECSEADIMDEEMYGGRRFMGDHILADDRKVPAFSRERIIDSIMSRKRIQMPAEMTACDRNLDLRDHLSRRREINGRPVTGFLRRREPPFLMIQNRERLRRHGVDQRLSRRLTSEVGFNIIDSNGEVETRSISNSHRLFRHPLQHSPRRMQHYRENRKQLFLPSKIFRKPFAKRRRYTPTSTDTAFHGPKTLAEIKQEKAAAAERGLFKSTSADFQDPKPLSEILKDKKRLDCE 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1530 525 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 106 IPR000571 GO:0046872
Alju06g1530 525 Pfam Zinc-finger containing family 7 63 IPR041686 -
Alju06g1530 525 Gene3D - 3 64 - -
Alju06g1530 525 Gene3D - 72 141 - -
Alju06g1530 525 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 524 - -
Alju06g1530 525 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Alju06g1530 525 MobiDBLite consensus disorder prediction 114 141 - -
Alju06g1530 525 ProSiteProfiles Zinc finger C3H1-type profile. 80 107 IPR000571 GO:0046872
Alju06g1530 525 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Alju06g1530 525 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Alju06g1530 525 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Alju06g1530 525 SMART c3hfinal6 80 106 IPR000571 GO:0046872
Alju06g1530 525 SUPERFAMILY CCCH zinc finger 82 105 IPR036855 GO:0046872
Alju06g1530 525 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1530 Alju-ChrAlju06 18828488 18831792 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju06g1530 zf-CCCH_3 1e-10 CL0537