Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1524 ATGTATTCTCAACTTTTTGCATTATCTAAGGTCTGCCCCTCTCTCTGTCTCTCACACACGCGCGCGCGTGCACACAAACAGCTCACAACACACCTTTTTAAAGTGGGCTTGCTTTCATTGGTTGTACTCAGGAATTGCTGGTCATTATCTTGCCTCGAGCATTTTGCTCGTGCTCAATTTGTATTCATCTTGGTGGAGTTGCTAGATGGGTCATTGCATTACTATTTAAAGCAGCACGACTGTTTGAATTGCTTCTTTTGTTTCCGCTGGATTTTGATTCAGTTTAAAAGAATACAAGGGTATTTCAGAATGAATACAAGGGTCGCAAGTAGTGAGGTTCCTTCTTATAGGGACACTCCTGACTATCGGCTTGCAGTGCGTCGCTCCAATAAGCCCTTTAAGGTTGAGCGCAATGAAATTCCTCTGCAATCTACTCCACGTAATTCCTCTTATCAGTGCAAGAGGCAGTCCCCTTCTAATGCCAAAAGTAATTCATCTCAAATCTGCAAATACTGGATGAATGGAAATTGTGTATATGGCGATCGCTGTTGGAACTTGCATTCTTGGTTTCATGGTGATGGCCTCTCTGTGCTCACTAGGCTCCATCAACACAAGACAATTGTCACTGGGATTACACTTCCCATTGGATCGGACCAACTTTTTTCTTGTAGCACTGATGGGACACTTAGGATGTGGGACTGTCATACGGGTCAATGTGTTAATGTAATAAATTTGGGTGATGAAGCAAGGTGTTTGATTAGTATGGGCCCATGGGTTATTGCTGGTATTCGGAATGATATTAAGGCTTGGAACATTCAGACAGCTACTGAGGTCACTCTTGATGGACCAAAGGGTCATGTACTTTCCATGTTTGTTTGCAACGATACACTTTTTGCTGGAGCAATGGATGGTGTTATTTATGCATGGAGACTGAGTTCTGAAGCAAATTTCCCATTTGAGCCATTAGCAATGTTGAATGGCCACAGCAAAGCTGTTGTTTGTTTAACTGGTGGACGTGGGGATAAGTTGTACTCAGGTTCTATAGATCATAGCATCAAGGTTTGGGACCTCAACACATTACAATGTACGATGACGTTGAAAGGGCACACTGATGTTGTGACATCCCTAATTTGTTGGGACCAGTACTTGTTATCAAGTTCATTGGATGGCACCGTAAAGGTTTGGGGTGCCACTAAGAAAGAAACTTTGGAAGTAGTATACACGCACAATGAAAAAAATGGTGTGGTTAGAATCAATGGTATGATTGATGCAAAAGGGAAACACACATTGTTTTGCTCGTGCAACAACCATTCAGTTGGACTATATGAAATGCCAACGTTTGAGGCAAGAGGAAGATTATTCTCAAAACAAGAAATTAGAGTAATAGAAGAAGGTCCTGATGGACTCTTTTTCACTGGAGACGGTACTGGTTTGCTCACTATCTGGAAATGGCTAGTAAAGCTGGAGCCTATGATCACATCTTCATAA 1488 0.4207 MYSQLFALSKVCPSLCLSHTRARAHKQLTTHLFKVGLLSLVVLRNCWSLSCLEHFARAQFVFILVELLDGSLHYYLKQHDCLNCFFCFRWILIQFKRIQGYFRMNTRVASSEVPSYRDTPDYRLAVRRSNKPFKVERNEIPLQSTPRNSSYQCKRQSPSNAKSNSSQICKYWMNGNCVYGDRCWNLHSWFHGDGLSVLTRLHQHKTIVTGITLPIGSDQLFSCSTDGTLRMWDCHTGQCVNVINLGDEARCLISMGPWVIAGIRNDIKAWNIQTATEVTLDGPKGHVLSMFVCNDTLFAGAMDGVIYAWRLSSEANFPFEPLAMLNGHSKAVVCLTGGRGDKLYSGSIDHSIKVWDLNTLQCTMTLKGHTDVVTSLICWDQYLLSSSLDGTVKVWGATKKETLEVVYTHNEKNGVVRINGMIDAKGKHTLFCSCNNHSVGLYEMPTFEARGRLFSKQEIRVIEEGPDGLFFTGDGTGLLTIWKWLVKLEPMITSS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1524 495 MobiDBLite consensus disorder prediction 144 164 - -
Alju06g1524 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 242 IPR001680 GO:0005515
Alju06g1524 495 SUPERFAMILY WD40 repeat-like 196 484 IPR036322 GO:0005515
Alju06g1524 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 359 - -
Alju06g1524 495 SMART c3hfinal6 163 189 IPR000571 GO:0046872
Alju06g1524 495 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 61 97 IPR035969 -
Alju06g1524 495 ProSitePatterns Trp-Asp (WD) repeats signature. 343 357 IPR019775 -
Alju06g1524 495 SMART WD40_4 194 233 IPR001680 GO:0005515
Alju06g1524 495 SMART WD40_4 359 396 IPR001680 GO:0005515
Alju06g1524 495 SMART WD40_4 273 310 IPR001680 GO:0005515
Alju06g1524 495 SMART WD40_4 318 356 IPR001680 GO:0005515
Alju06g1524 495 SMART WD40_4 446 483 IPR001680 GO:0005515
Alju06g1524 495 Pfam WD domain, G-beta repeat 320 356 IPR001680 GO:0005515
Alju06g1524 495 Pfam WD domain, G-beta repeat 361 395 IPR001680 GO:0005515
Alju06g1524 495 SUPERFAMILY CCCH zinc finger 165 188 IPR036855 GO:0046872
Alju06g1524 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 233 - -
Alju06g1524 495 Gene3D - 258 489 IPR015943 GO:0005515
Alju06g1524 495 Gene3D - 180 257 IPR015943 GO:0005515
Alju06g1524 495 PANTHER - 104 485 IPR044715 -
Alju06g1524 495 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Alju06g1524 495 PRINTS G protein beta WD-40 repeat signature 383 397 IPR020472 -
Alju06g1524 495 PRINTS G protein beta WD-40 repeat signature 343 357 IPR020472 -
Alju06g1524 495 ProSiteProfiles Zinc finger C3H1-type profile. 163 190 IPR000571 GO:0046872
Alju06g1524 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 366 405 IPR001680 GO:0005515
Alju06g1524 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 365 IPR001680 GO:0005515
Alju06g1524 495 Pfam Nucleoporin Nup120/160 209 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1524 Alju-ChrAlju06 18345608 18351031 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1524 270 441 Acyl Lipid Metabolism Gene Families AT3G18860 28.249 1.14e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju06g1524 WD40 0.0014 CL0186