Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1500 ATGTCTACCGATTACTCGAATGGGGACTGCGAGTCCCTCCATCAACCGTTGCTTCATTCCGGAAGATCTAGAATCAATTCCACTTCGCAGGTTGCTATTGTTGGAGCCAATGTCTGTCCTATTGAGAGCCTTGACTACGAGATTATCGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCCGAGGGAAGATTCAAATACTCCAGTACATATCCATGAAGTGGGTTTTGTGCTTGTTGATTGGTGCGATTGTTGGCGTGGTTGGATTTTACCATAATCTCGCAGTTGAGACTTTCGCTGGCATCAAGTTCGTGATCACATCTAACTTGATGTTGCAGAGGAGGTTTCTCTTGGCCTTCGTAGTATTTTGTTCTTCGAATTTGGTTCTCATTCTTTTTTCTACTATAATCACGGCTTTTATAGCACCTGCTGCCGCAGGTTCTGGTATACCAGAGGTAAAAGCCTACTTAAATGGAGTAGATGCCCCTGGAATATTTACGCTCAGAACTCTAATCGTTAAGGTTATTGGAAGCATTACAGCAGTTTCATCATCCCTTCTTGTTGGAAAGGCTGGGCCTATGGTTCATATTGGTGCATGTGTGGGATCATTGTTGGGTCAGGGTGGTTCAAAGCAATATGGACTAACATGGAAATGGTTACATTTTTTTAAGAACGACCGAGATCGTAGGGATCTAATAACATGTGGAGCAGCTGCTGGAATGGCTGCAGCCTTCCGTGCCCCAGTTGGTGGGGTGTTGTTTGCTTTTGAAGAAATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGAGAACTTTCTTCACAACAGCAGTAGTTGCACTTGTGCTTCGTTCATTGATAGACTTTTGTTTAAGCGGTAAATGCGGGCCATTTGGTAAAGGAGGGCTGATAATGTTTGATGTTAATCCAACAAGTATTGACTATCACCTGGCGAATGTGCTTCCTGCAATGATTATTGGGGTTGTAGGAGGCGTACTTGGAAGCTTATATAATGCTCTGTTGACCAAGGTTCTCCGTGTCTACAACATGATCCATGAGAAAGGCATTCAATACAAAATTTTGCTTGCTTGCTTAATCTCTATTATCACTTCTTGTCTTCTTTTTGGATTGCCATGGCTTGTATCTTGTCGACCTTGTCCAGTTGATGCAGCTGAGGAATGTCCTACAATAGGCCGTTCTGGTAACTACAAGAAATTCCAATGTCCTCCTGGTCATTACAATGATCTTGCCAGCCTTTTTTTTAACACATGTGGTGATGCTATCAAAAATCTATTTAGCATGAACACAGATGAGGAGTTTGCATATTCATCCATGTTTACCTTTTTCATCTCATGCTTTTTTCTAAGCATCTTTAGCTATGGAGTTGTTGCTCCAGCTGGTCTTTTTGTGCCAAATATTGTGATTGGTGCATCTTACGGGCGTGTTGTTGGTATGATGGTTGGCAAATATTTCACTCTTAACCATGGCCTTTATGCTGTATTGGGTGCTGCTTCCTTTCTAGGAGGATCTATGAGAATGACAGTTTCCCTTTGTGTAATCTTACTAGAACTAACAAATAATTTGTCATTGCTACCCTTGGTGATGGTGTCTCTTCTGACGTCTAAAACAGTAGCTGATGCTTTCAATGCAAATATATATGACCTTATCATGAAAGCAAAAGGGTTTCCTTATTTAAAAAATCATGTTGAGCCATACATGAGGCAGCTAACAGTAGGCGATGTAGTCACGGGCCCACTACAGGTCTTTAATGGCATTGAGAAGGTTCGCAACATTGTGTTTGTTCTCAGAACTTCAAGTCACAATGGGTTCCCTGTGGTTGATGAGCCTCCATATTCAGAAGCTCCAGTTTTATATGGTATAATCCTTCGTGACCATCTTCTCACATTGTTAAAGAAGAAAGATTTCTTGCCCGCACCAATGGCAATAGGAAATGATGCCTTCACGAAGTTTTCTGCTGATGACTTTGCAAAGAAGGGTTCTGGCAATAGTGACAAGATAGAGGATCTACAGTTCACTGAGGAAGAGTTGGACATGTTCATAGATCTCCATCCATTTAGTAATGCTTCACCCTATACTGTCCTTGAGACAATGTCTCTGGGAAAGGCCCTTACCCTTTTTCGGAGTGTCGGTTTAAGGCATCTTCTGGTGATACCCAGGGTCTTTAATGGGTTCCTGGTTGTCGGCATGCTAACAAGGCACGATTTCATGCCGGAACACATTTTGGGTTTGCATCCTTTGCTGGAAAGAAGCAGATGGAGAGGATTAAGAATAAAGTTTCCTTTTAGGAACTTGGTCACTTGTTACATCATAATTCTTATAGTATATGAATGCTTCCCTTGGAAATGGAATATCATCAACATGGGGATGTAG 2385 0.4218 MSTDYSNGDCESLHQPLLHSGRSRINSTSQVAIVGANVCPIESLDYEIIENEFFKQDWRSRGKIQILQYISMKWVLCLLIGAIVGVVGFYHNLAVETFAGIKFVITSNLMLQRRFLLAFVVFCSSNLVLILFSTIITAFIAPAAAGSGIPEVKAYLNGVDAPGIFTLRTLIVKVIGSITAVSSSLLVGKAGPMVHIGACVGSLLGQGGSKQYGLTWKWLHFFKNDRDRRDLITCGAAAGMAAAFRAPVGGVLFAFEEMASWWRSALLWRTFFTTAVVALVLRSLIDFCLSGKCGPFGKGGLIMFDVNPTSIDYHLANVLPAMIIGVVGGVLGSLYNALLTKVLRVYNMIHEKGIQYKILLACLISIITSCLLFGLPWLVSCRPCPVDAAEECPTIGRSGNYKKFQCPPGHYNDLASLFFNTCGDAIKNLFSMNTDEEFAYSSMFTFFISCFFLSIFSYGVVAPAGLFVPNIVIGASYGRVVGMMVGKYFTLNHGLYAVLGAASFLGGSMRMTVSLCVILLELTNNLSLLPLVMVSLLTSKTVADAFNANIYDLIMKAKGFPYLKNHVEPYMRQLTVGDVVTGPLQVFNGIEKVRNIVFVLRTSSHNGFPVVDEPPYSEAPVLYGIILRDHLLTLLKKKDFLPAPMAIGNDAFTKFSADDFAKKGSGNSDKIEDLQFTEEELDMFIDLHPFSNASPYTVLETMSLGKALTLFRSVGLRHLLVIPRVFNGFLVVGMLTRHDFMPEHILGLHPLLERSRWRGLRIKFPFRNLVTCYIIILIVYECFPWKWNIINMGM 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1500 794 CDD CBS_pair_voltage-gated_CLC_euk_bac 575 743 - -
Alju06g1500 794 ProSiteProfiles CBS domain profile. 690 751 IPR000644 -
Alju06g1500 794 CDD ClC_6_like 42 565 - -
Alju06g1500 794 PRINTS Plant CLC chloride channel signature 47 55 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju06g1500 794 PRINTS Plant CLC chloride channel signature 414 430 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju06g1500 794 PRINTS Plant CLC chloride channel signature 290 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju06g1500 794 PRINTS Plant CLC chloride channel signature 258 266 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju06g1500 794 PRINTS Plant CLC chloride channel signature 272 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju06g1500 794 Gene3D Clc chloride channel 65 562 - -
Alju06g1500 794 SUPERFAMILY CBS-domain pair 566 741 IPR046342 -
Alju06g1500 794 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 19 747 - -
Alju06g1500 794 Gene3D - 563 742 IPR046342 -
Alju06g1500 794 SMART cbs_1 583 636 IPR000644 -
Alju06g1500 794 SMART cbs_1 694 745 IPR000644 -
Alju06g1500 794 Pfam Voltage gated chloride channel 130 544 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju06g1500 794 SUPERFAMILY Clc chloride channel 51 565 IPR014743 -
Alju06g1500 794 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju06g1500 794 PRINTS Chloride channel signature 550 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju06g1500 794 PRINTS Chloride channel signature 462 482 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju06g1500 794 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju06g1500 794 PRINTS Chloride channel signature 512 531 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju06g1500 794 PRINTS Chloride channel signature 237 256 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju06g1500 794 PRINTS Chloride channel signature 494 510 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju06g1500 794 FunFam Chloride channel ClC3 65 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1500 Alju-ChrAlju06 17694701 17698964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1500 11 766 Ion Channels AT5G33280 73.942 0.0 1127