LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju06g1489	ATGGAAACAGAACAACAAGAACCAGAAGCTCTCCTTCACAATCAACTTCAATTAACCACTGCCTCTTCTTCTTCTTCTTTTTCTTCCTCCGGCACCATAGAAGCCATTGATGTACACCATGAAGCTCATAAAAAAGAAGAGAGTGTGAAGAGGAAGAAGACGATGAAGAAGAACACAGACATGGTGGACGGGAAGTACCCAGCGTACAGTGGCGTACGTATGCGTCAATGGGGGAAATGGGTTTCAGAAATCAGAGAACCCCGAAAGAAATCCAGAATGTGGCTCGGCACTTTTCCCATGGTGGAAATGGCCGCTCGAGCTCACGACGTCGCCTCTCTCACCATTAAAGGCGCCTCTGCTTTCCTCAACTTCCCGGAACTAGCCTCCGTGCTTCCTGCTTGA	402	0.4851	METEQQEPEALLHNQLQLTTASSSSSFSSSGTIEAIDVHHEAHKKEESVKRKKTMKKNTDMVDGKYPAYSGVRMRQWGKWVSEIREPRKKSRMWLGTFPMVEMAARAHDVASLTIKGASAFLNFPELASVLPA	133

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju06g1489	133	SUPERFAMILY	DNA-binding domain	68	126	IPR016177	GO:0003677
	Alju06g1489	133	MobiDBLite	consensus disorder prediction	1	31	-	-
	Alju06g1489	133	SMART	rav1_2	68	131	IPR001471	GO:0003700\|GO:0006355
	Alju06g1489	133	Gene3D	AP2/ERF domain	68	126	IPR036955	GO:0003700\|GO:0006355
	Alju06g1489	133	MobiDBLite	consensus disorder prediction	8	31	-	-
	Alju06g1489	133	ProSiteProfiles	AP2/ERF domain profile.	68	125	IPR001471	GO:0003700\|GO:0006355
	Alju06g1489	133	FunFam	Ethylene-responsive transcription factor 2	67	126	-	-
	Alju06g1489	133	CDD	AP2	69	127	IPR001471	GO:0003700\|GO:0006355
	Alju06g1489	133	Pfam	AP2 domain	67	117	IPR001471	GO:0003700\|GO:0006355
	Alju06g1489	133	PRINTS	Ethylene responsive element binding protein signature	91	107	IPR001471	GO:0003700\|GO:0006355
	Alju06g1489	133	PRINTS	Ethylene responsive element binding protein signature	69	80	IPR001471	GO:0003700\|GO:0006355
	Alju06g1489	133	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	46	132	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju06g1489	Alju-ChrAlju06	17334609	17335010	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju06g1489	44	132	AP2-EREBP Transcription Factor Family	AT5G11590	66.292	7.57e-37	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju06g1489		AP2	6.1e-12	CL0081