Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1471 ATGATGGCAATTTTCGGGCTCGTAGTCCTCTCATTATTGACTCCATGCTGGTACGTTATCCTCAGAAACATTGAGCAGCAAGTGATTTCAAACTCAAAAAACAATACACTTTCAGAGTTACAATCTCAAGTTTCCCACTCCGCCAAACTATTACACCCCTTCACTTCATCTTCAACCAATTTAGCTCGCTTTCTGGGTTCCACCTTCAACAATACCCCTAACAATGTCTCCTCCTTCGACATTGAGACCAAAGTTGCTCCAGTTTTGTTTCAAGCATTTCAGAATATTCCTCACTTGGCTAAGATTTCATACATTGATACAGAAGGTCTCCTCTTCTCATACTTCATCGATCATGATCAAACTCTTGCATTATACTCTAACTCCTCGTTTTCTTCTCCCTTGAGTGCTTCAAAAATGATTTACTATGTTCAACCTGTAAACCCTAGCACTGGAGTATTACATGGTGAATCCAGAATATATGAGCATCCTATTAACACAAGTTGGATTCAGGAAGCTGTGAATAGTTCCCATGGATATTCCACTTTAGGACCCATGTGGAGCAATGATCGTCAAATTTTATATGTTAATTTAGAGAGAGTATCAAGAACAGGGGTGATCTCATTAGGGTTTGAAGCAACTTCAATTATTGATTTTGTGACCCCTATTATTGGGAGTCAAGGTGAAAGCTTATTACTGTATTTGGCTTCCAAACAAGGCAAAGTGATTCTCCAAGGATTCAAAAGTGTCCATACAGATATTGTATTCTCTATCGATACAGCTTCCTTCTATTTAGTGAAGTCAAATGGTGACCAAGTGAGTTATCTAGGCTCTGTTTCATGCAAGGATGATGAAGCCTCTGCTTCAGTTTTAAAAATTGGGGCTACTACGTTTTTGACACAATGCTCATCAATTGATATAATGGGAATAGAATCGGTTTATGTCATAGCTATACCGCGAAATGGATTGGTGGCCTTTGTACACAAGAGTGAAAAACTTGGGTTAGTGCTAATGAGTTGTATGATAGTTGCTATATTGATCTCCATCTCTAGTTTTGTATTGTTAAATGCTATAATGGGTTGGAGAGAGATGCATTTGTGTTCCTCTTTAATCAAGCAAATGGAAGCCACTCAACAAGCTGAGAGGAAGAGTATGAATAAGAGTGTTGCATGTTCCAGTGCGAGCCACGATATTCGTGCTTCTCTTGCCGGTCTTATTGGTTTGGTAGAGATGTCTTATGAAGAAGTTGTCCCTGATTCAGAACTAGAGACCAATTTAAACCAGATGGGTGCTTGTATAAAAGACTTGCAAGGGCTATTGAATTCTATTCTTGATACAAGTAAAATTGAGGCAGGGAAAATGCAACTTGAGGAACAAGAATTTGATCTATCCCAGTTCATAGAAGATAAAGTTGACTTGTTCCATGCTGCAGCAATGAAGAAAGGTGTTGATCTTGTATTGGACCACTGTGATGGTTCTGTTATCAGATATTCACGTGTAAAAGGCGACAAAGGAAAGCTTCAGCAAGTTTTATGTAATTTACTGAGTAACGCTGTTAAGTTTACTGATAAAGGACACATAGTTGTTCGAGCTTGGTCTCAAAAGCCAAGTTTCCAGAACTCAATAATGTCTACTCACAGATACAGTTTCATGAAACTCTTGTCACGCTTGTTTCGCAAGAAAAATCAAGCAGATATTGATGTAGAAGACATGAATAGTGCAATCCAACAAGACCCAAACTACTTGGAGTTTGTGTTTGAAATAGATGACACTGGAAAAGGAATTCCTAAGGAGAAAGAAGCGTCAGTGTTTGAGAATTATGTTCAAGTCAAAGAAACTGGTTTAGGACTAGAAGGCACTGGCTTGGGACTTGGTATTGTTCAATCACTGGTACATTTGATGCATGGGAATATTGGAATTGTGGACAAGGAAATTGATGAAAAAGGAACATGCTTTAGATTCAGTGTCCTCCTTGGCGTAAGCGAGACATTAACCGGTAGCAATAATAGTACAAGGGAAGTTAATGATTCAAATCAACCTCAGAGACAAGATATGAACACTCCTAGTTCTGGTTCTAGCATCTGTTCCCCAAGCCCAAGATTACCTATTTTTGCTTCTAATAATAGGTTCAGAGATTCTCATGTTGTTCTTCTGATTCAAAATGAGGGGCGTCGAAGGATTACCAAAAGGTTCATGGAGAGATTAGGGATTAAAGTTAAGGTTGTGAAGAAGTGGGAACATTTGTCTCAAACTCTCAAGAAGATCAAGCAAAAGCAGTGCAATTCCAGCCATAGTTCTACAGGAACATCATCATATATGAGTTCTGATCAGTCTACACCTCACAATTCTAATAATGCTAGAGCCAAAAAATTTCCTTTGAGTGCTGCAGATGGAGCAGACTATATCACTTCGGTTTTAAACAAGTTAGAAGATGGAACTTCCATGGGTTTTGTTCTGCTTGTGATTGATTCATTAGCAGCACCCTTATCAGAACTTGGCATGATAATATCAGAGTTCAGAAGAGGCCTCAGAAATCCTTGTAAGGTTGTTTGGTTAAATAAGCCACTCGTGAGCAATGTCGGTTTCAAAGCACCCGATGATGAAGATGTGATCGATCCAAACGACATTGTCTTGTCCAAACCATTACATGGTACTCGTTTGTTCAACATTATCAGGCTTCTTCCTGAGTTTGGCGGTGGTTCTACATGCTTCTCTGGAATTAAAAGAGCAAATAGAGACAGTAGTTTTCACAATACAATGAGAAAAACATTAAAAAAATCCTATGTACCAAGATATCAATCACCTGTTTTAGACAGAATAGAACTTACCTCACTTGATCCACCCCCATTTCAAGATGTTGAACTACAAGCAGATTGTGATAATGGTTCATGGAGATCCTTCAAGGCAAGGAATTCTCAAGTTGATCATGGAGAGATACAAGAATGTAGTACGTCAAGCAGTGACAAGCCCTTAAGTGGCAAAAGATTTTTGGTTGTTGACGACACTGGATATCTACGTACGATCGCTTCAAAGACTTTGAAACAGTTAGGTGCAACAAGTATGGAATGTAACAATGGTGAAGATGCAGTAAACCTAGTTGAAAAGAGTCTATCTGAGGCTTTCCCCTATCCTCCTTATGATTACATCTTAATGGATTGTGAGATGCCGGTAATGGATGGGTTCGAGGCGACGAAGCAGATAAGGAAGATGGAGAAGAGTTATGGGGTTTACATACCCATCATGGCATTAACAGCTCATACGTCTGAGAAGGAAGCAAATAAGATCAAAGAGGCAGGAATGGATGCTCATTTAAGTAAGCCACTAAAGAAAGAGCATTTATTGGATGCCATCAGATTCATAGACAGTAAATTGTGTAACATGTCAATGATCCAAGAGGCACAATTTGGTTCATGTGAATGCCATAAATGA 3426 0.39 MMAIFGLVVLSLLTPCWYVILRNIEQQVISNSKNNTLSELQSQVSHSAKLLHPFTSSSTNLARFLGSTFNNTPNNVSSFDIETKVAPVLFQAFQNIPHLAKISYIDTEGLLFSYFIDHDQTLALYSNSSFSSPLSASKMIYYVQPVNPSTGVLHGESRIYEHPINTSWIQEAVNSSHGYSTLGPMWSNDRQILYVNLERVSRTGVISLGFEATSIIDFVTPIIGSQGESLLLYLASKQGKVILQGFKSVHTDIVFSIDTASFYLVKSNGDQVSYLGSVSCKDDEASASVLKIGATTFLTQCSSIDIMGIESVYVIAIPRNGLVAFVHKSEKLGLVLMSCMIVAILISISSFVLLNAIMGWREMHLCSSLIKQMEATQQAERKSMNKSVACSSASHDIRASLAGLIGLVEMSYEEVVPDSELETNLNQMGACIKDLQGLLNSILDTSKIEAGKMQLEEQEFDLSQFIEDKVDLFHAAAMKKGVDLVLDHCDGSVIRYSRVKGDKGKLQQVLCNLLSNAVKFTDKGHIVVRAWSQKPSFQNSIMSTHRYSFMKLLSRLFRKKNQADIDVEDMNSAIQQDPNYLEFVFEIDDTGKGIPKEKEASVFENYVQVKETGLGLEGTGLGLGIVQSLVHLMHGNIGIVDKEIDEKGTCFRFSVLLGVSETLTGSNNSTREVNDSNQPQRQDMNTPSSGSSICSPSPRLPIFASNNRFRDSHVVLLIQNEGRRRITKRFMERLGIKVKVVKKWEHLSQTLKKIKQKQCNSSHSSTGTSSYMSSDQSTPHNSNNARAKKFPLSAADGADYITSVLNKLEDGTSMGFVLLVIDSLAAPLSELGMIISEFRRGLRNPCKVVWLNKPLVSNVGFKAPDDEDVIDPNDIVLSKPLHGTRLFNIIRLLPEFGGGSTCFSGIKRANRDSSFHNTMRKTLKKSYVPRYQSPVLDRIELTSLDPPPFQDVELQADCDNGSWRSFKARNSQVDHGEIQECSTSSSDKPLSGKRFLVVDDTGYLRTIASKTLKQLGATSMECNNGEDAVNLVEKSLSEAFPYPPYDYILMDCEMPVMDGFEATKQIRKMEKSYGVYIPIMALTAHTSEKEANKIKEAGMDAHLSKPLKKEHLLDAIRFIDSKLCNMSMIQEAQFGSCECHK 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1471 1141 ProSiteProfiles Histidine kinase domain profile. 392 659 IPR005467 -
Alju06g1471 1141 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 501 656 IPR003594 -
Alju06g1471 1141 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 373 453 IPR036097 GO:0000155|GO:0007165
Alju06g1471 1141 Gene3D - 372 452 - -
Alju06g1471 1141 SMART REC_2 993 1116 IPR001789 GO:0000160
Alju06g1471 1141 ProSiteProfiles Response regulatory domain profile. 994 1120 IPR001789 GO:0000160
Alju06g1471 1141 Gene3D - 971 1121 - -
Alju06g1471 1141 Pfam Response regulator receiver domain 996 1117 IPR001789 GO:0000160
Alju06g1471 1141 CDD HisKA 391 447 IPR003661 GO:0000155|GO:0007165
Alju06g1471 1141 MobiDBLite consensus disorder prediction 666 697 - -
Alju06g1471 1141 SMART HisKA_10 385 451 IPR003661 GO:0000155|GO:0007165
Alju06g1471 1141 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 440 655 IPR036890 -
Alju06g1471 1141 MobiDBLite consensus disorder prediction 755 786 - -
Alju06g1471 1141 PRINTS Bacterial sensor protein C-terminal signature 601 611 IPR004358 GO:0016310|GO:0016772
Alju06g1471 1141 PRINTS Bacterial sensor protein C-terminal signature 617 635 IPR004358 GO:0016310|GO:0016772
Alju06g1471 1141 PRINTS Bacterial sensor protein C-terminal signature 583 597 IPR004358 GO:0016310|GO:0016772
Alju06g1471 1141 PANTHER TWO-COMPONENT HISTIDINE KINASE 30 1116 - -
Alju06g1471 1141 SMART HKATPase_4 501 659 IPR003594 -
Alju06g1471 1141 SUPERFAMILY CheY-like 989 1117 IPR011006 -
Alju06g1471 1141 Gene3D - 453 662 IPR036890 -
Alju06g1471 1141 CDD REC_hyHK_CKI1_RcsC-like 995 1116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1471 Alju-ChrAlju06 16635540 16640601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1471 1 1122 Histidine Kinase Gene Family AT2G47430 37.217 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju06g1471 HATPase_c 2.4e-21 CL0025