Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1452 ATGCTCATCAATTCTGGGACAATGGTGATTGAGATTCCACATGAACTTCTCTCAAAAGTTGAAGTTGAACTTGAAGCAGAATATGACTTGTTATACACAGCTATCCTTGTGACCATGATTCAGGGTTTCTGGCTGCGCGGCTTTCTCACACACTACATTCTGCCACTCCGTTCCCCAACTCCAAGTGCTTCAACCATGGCGGAACAAACTGAGAAGGCTTTCCTGAAGCAGCCAAAAGTGTTTCTGAGCTCGAAGAAATCTGGGAAGGGGAAGAGGCCTGGAAAAGGAGGGAACCGCTTTTGGAAGTCTGTTGGTCTTGGATTCAAGACTCCCAGGGAAGCTATTGAAGGAACCTACATTGATAAGAAGTGTCCCTTCACTGGCTCTGTTTCTATCAGGGGTCGTATCATTGCTGGCACTTGTCACAGTGCTAAGATGACAAGAACCATAATTGTTAGAAGGAACTATCTCCATTTTGTCAAGAAGTACCAGAGGTATGAGAAGAGGCACTCAAACATTGCTGCTCACACATCTCCTTGCTTTCGTGTAAAAGAAGGAGATCATGTGATCATTGGCCAGTGCAGGCCACTCTCAAAGACGGTGAGGTTCAACGTGCTAAAAGTGATCCCAGCTGGATCTTCTAGTGGGAAGAAGGCATTTACTGGAATGTGA 672 0.4568 MLINSGTMVIEIPHELLSKVEVELEAEYDLLYTAILVTMIQGFWLRGFLTHYILPLRSPTPSASTMAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSVGLGFKTPREAIEGTYIDKKCPFTGSVSIRGRIIAGTCHSAKMTRTIIVRRNYLHFVKKYQRYEKRHSNIAAHTSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGKKAFTGM 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1452 223 PRINTS Ribosomal protein S17 family signature 153 176 IPR000266 GO:0003735|GO:0005840|GO:0006412
Alju06g1452 223 PRINTS Ribosomal protein S17 family signature 196 203 IPR000266 GO:0003735|GO:0005840|GO:0006412
Alju06g1452 223 PRINTS Ribosomal protein S17 family signature 186 196 IPR000266 GO:0003735|GO:0005840|GO:0006412
Alju06g1452 223 FunFam 40S ribosomal protein S11 66 222 - -
Alju06g1452 223 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 75 215 IPR000266 GO:0003735|GO:0005840|GO:0006412
Alju06g1452 223 NCBIfam 30S ribosomal protein S17 120 208 IPR028333 -
Alju06g1452 223 Pfam Ribosomal protein S17 139 207 IPR000266 GO:0003735|GO:0005840|GO:0006412
Alju06g1452 223 Pfam Ribosomal_S17 N-terminal 69 137 IPR032440 -
Alju06g1452 223 ProSitePatterns Ribosomal protein S17 signature. 186 198 IPR019979 GO:0003735|GO:0005840|GO:0006412
Alju06g1452 223 SUPERFAMILY Nucleic acid-binding proteins 133 212 IPR012340 -
Alju06g1452 223 Gene3D - 57 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1452 Alju-ChrAlju06 16322582 16324929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1452 66 223 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 90.566 4.41e-96 275