Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1321 ATGGCGAAACTATCACAGACGAAGAACAACACCAGAAACAACAACAACCTTGGCGTCATCACTAACAGTACTACTAGTGTGCCCACCAAAGTGAAACGAACAAGAAGAAGTGTCCCTAGAGACTCTCCTCCTCAACGTAGCTCTATATTCCGAGGAGTCACTAGGCACCGGTGGACTGGCCGGTATGAAGCTCACTTGTGGGACAAGAATTGTTGGAACGAATCGCAGAATAAGAAAGGCAGACAAGGTGCTTATGACGATGAAGAAGCAGCGGCACATGCTTATGATTTAGCTGCATTGAAGTACTGGGGTCAAGACACAATCCTCAACTTTCCGGTGGCAACGTACCTGAACGAACTGAAAGAAATGGAGGGTCAATCAAGAGAAGAATATATTGGATCGTTAAGGAGGAAAAGCAGTGGTTTTTCCCGGGGAGTTTCTAAATACAGAGGCGTTGCCAGACATCATCATAATGGAAGATGGGAAGCTCGGATTGGCAGAGTTTTCGGCAATAAATATCTCTATCTTGGTACTTATGCTACTCAAGAAGAAGCTGCCACGGCTTATGATATGGCGGCTATAGAGTACCGGGGGCTTAACGCCGTCACCAACTTCGATCTCAGCCGTTATATAAAGTGGCTTAAGCCTAATTCCAACGACAACAACACTATTAATCTTAGTGGCCAATCTAACTGTGACCCTAACCGTAATATTGTTGACACCTTAACGACATCAAACCATATAACTCAAGAGCACTTCTTCCACAACCACCAGCTTCAGGAATCGTTCGACGTTAATGGCAGAGAAGAAGCCACGTCGCTGACTCAGCCGGCGGCGGCAACTGCTACATCAGCCCTTGGGCTGCTGCTTCAGTCGTCCAAGTTCAAGGAAATGGTGGAGATGACGTCCACGGCTGATGATTTGTCCCCGCCGGTGGCACCGGAATCTGAGATTCTGCAGCAGTGCAGGTTTCCCGACGACATTCAGACGTACTTTGAGTGTGAAGACTCCAACAGTAATGGGGAAGGGGATGATCATATCATGTTCAGTGAGCTCAACTCCTTCGTGCCTCCTCTGTTCCACTGTGATGATTTTTGA 1098 0.4736 MAKLSQTKNNTRNNNNLGVITNSTTSVPTKVKRTRRSVPRDSPPQRSSIFRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQDTILNFPVATYLNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNSNDNNTINLSGQSNCDPNRNIVDTLTTSNHITQEHFFHNHQLQESFDVNGREEATSLTQPAAATATSALGLLLQSSKFKEMVEMTSTADDLSPPVAPESEILQQCRFPDDIQTYFECEDSNSNGEGDDHIMFSELNSFVPPLFHCDDF 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1321 365 CDD AP2 147 208 IPR001471 GO:0003700|GO:0006355
Alju06g1321 365 SUPERFAMILY DNA-binding domain 147 208 IPR016177 GO:0003677
Alju06g1321 365 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 266 - -
Alju06g1321 365 MobiDBLite consensus disorder prediction 1 32 - -
Alju06g1321 365 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700|GO:0006355
Alju06g1321 365 Pfam AP2 domain 50 104 IPR001471 GO:0003700|GO:0006355
Alju06g1321 365 Pfam AP2 domain 147 198 IPR001471 GO:0003700|GO:0006355
Alju06g1321 365 SUPERFAMILY DNA-binding domain 48 113 IPR016177 GO:0003677
Alju06g1321 365 ProSiteProfiles AP2/ERF domain profile. 49 112 IPR001471 GO:0003700|GO:0006355
Alju06g1321 365 SMART rav1_2 49 118 IPR001471 GO:0003700|GO:0006355
Alju06g1321 365 SMART rav1_2 148 212 IPR001471 GO:0003700|GO:0006355
Alju06g1321 365 FunFam AP2-like ethylene-responsive transcription factor 147 208 - -
Alju06g1321 365 MobiDBLite consensus disorder prediction 1 48 - -
Alju06g1321 365 PRINTS Ethylene responsive element binding protein signature 188 208 IPR001471 GO:0003700|GO:0006355
Alju06g1321 365 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Alju06g1321 365 Gene3D AP2/ERF domain 147 208 IPR036955 GO:0003700|GO:0006355
Alju06g1321 365 Gene3D AP2/ERF domain 49 114 IPR036955 GO:0003700|GO:0006355
Alju06g1321 365 FunFam AP2-like ethylene-responsive transcription factor 48 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1321 Alju-ChrAlju06 14275713 14278366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1321 45 210 AP2-EREBP Transcription Factor Family AT5G57390 70.414 4.41e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Alju06g1321 AP2 6.3e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g1321 06 14275713 14278366 Alju13g1057 13 29405189 29407989 CCT
Alju06g1321 06 14275713 14278366 Alju06g1321 06 14275713 14278366 ECH