Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1286 ATGGAACGAGAGCAACCACCACCGTTCTACCTTTCTCACCCACGTCTTCCTTCTTCTTCACCACCATCCAATTTTGGATCTGATAATGGTAATTTCTTGAATTTAAACGACAAGGTCAGCCCTAGCATGCTCCTAGTCATAATAATTCTGGCCATTGTCTTCTTCGCTTCTGGGCTGATTCACCTCCTAGTTAGATTCCTATGGAGGCCTCAACCCAGAGACCCAGATGATTTAGACAATGTGTCTGCTCTTCAAGGTCAGTTACAGCAACTTTTTCACCTTCACGATGCCGGGGTTGACCAATCCTTCATAGATAACACCCTCCCTGTGTTCCATTACAAAGCCATCATAGGATTGAAGGACCCGTTTGATTGTGCTGTGTGTCTGTGTGAATTTGAAGCTGATGATAAACTCAGATTGTTACCCAAATGTAGCCATGCTTTTCACATGGAGTGTATTGATACTTGGCTCTTGTCTCACTCAACTTGCCCCCTCTGTAGAGCTAGCTTGCTCTCTGATTTCTCCCCCACAAACGCTTCTTCTTCTTCTTCACCTTTCGTCTTCGTTCTAGAATCTGGTAGTGAAAGTTCCAGAGAGATTGTTCCAGAAAGAGAGAATACAGTTGGTAATGGTAGGACCAGTTCTGTGATTGGAGATAGCGAACTTGGGTTAACCCATATGGATTTGTCACACAAGTCTGTTGATTTAAGTTCAGATACTAATCCTGATCAGATTACAGTTGGGGAATCACATGAGAAAGTGGTCACTGTGAAGCTGGGAAAGTTCAGGAATGTGGACTGTGTTGGAGAAGGAAGCAGTGTAGAAGACATGGGAGAAGCTAGAAGGTGTCTTTCTATGGGGTCATTTGCGTATGTTATGGACCACAATTCTTCACTTCAAGTACCCGTAAGAGCAACGATGAAGAAGCAGTCAAGTAAGAAACCTGCTTTGCCTTTAACACCAGGACGCAGGATTGCCATGTCAGAATGTGACTGTGAGTCCACCAGAGATTTCAAATTCACAGGTTTTGACACAGTCAAAGGTTTTGAGAGTTCATCTGAAACTGCAAGTATTGTTGAGAGAAGAAAAAAAGAGAGCTTTTCAGTTTCAAAGATTTGGCTTCGAGGAAAGGAAGAAAAGCCACAAGCTATGGCTGATTCATCCTCAAGAAGGGCTGTTTCGTTTCGATTCTCGGTAGCGAGGGAAGATTTGAAGGAGAAGAATGGGAAGTGGGAAATTGATGATGAAAATCAGAGTTGTTACAGTGTGGATTCTCAGGGCAGAGCACCCTCTTTTGCAAGAAGAACTCTGCTTTGGCTTACTGGGAAACAGAACAAGGTTGTTCATTCATCTTTTGCTTCAAACTTATGTTCTGTACCTTTTGAGATAGAGAAAATAGTTCAGAGTGGACAACCAAATATTTTGGTGGCGAAATCTGTTCTGGATGTACTATACGTTTCGGAGATACGGAATACAAACAATTATGTTGATTTCTCAGTCATTTCTGAACCCACTTTAACATGGCATCAGAGCCCAGGTCCTTTAAGATCGAGCAATGAGCTAGCACAACTTGAAACCCAACCCATCCTTAACACGTATGTTTCTGTCCTCTTCCTGAAGGTTCTCGAGTTCTCTTCGTCAAGCACATTTTCCCCTCTTTTCTTCAAGATTCACTATTCGATTAGGGCGCACACACGCACACACGATGGGCTTACAGAGTAA 1722 0.4303 MEREQPPPFYLSHPRLPSSSPPSNFGSDNGNFLNLNDKVSPSMLLVIIILAIVFFASGLIHLLVRFLWRPQPRDPDDLDNVSALQGQLQQLFHLHDAGVDQSFIDNTLPVFHYKAIIGLKDPFDCAVCLCEFEADDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLSDFSPTNASSSSSPFVFVLESGSESSREIVPERENTVGNGRTSSVIGDSELGLTHMDLSHKSVDLSSDTNPDQITVGESHEKVVTVKLGKFRNVDCVGEGSSVEDMGEARRCLSMGSFAYVMDHNSSLQVPVRATMKKQSSKKPALPLTPGRRIAMSECDCESTRDFKFTGFDTVKGFESSSETASIVERRKKESFSVSKIWLRGKEEKPQAMADSSSRRAVSFRFSVAREDLKEKNGKWEIDDENQSCYSVDSQGRAPSFARRTLLWLTGKQNKVVHSSFASNLCSVPFEIEKIVQSGQPNILVAKSVLDVLYVSEIRNTNNYVDFSVISEPTLTWHQSPGPLRSSNELAQLETQPILNTYVSVLFLKVLEFSSSSTFSPLFFKIHYSIRAHTRTHDGLTE 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1286 573 CDD RING-H2_EL5-like 124 167 - -
Alju06g1286 573 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 36 373 - -
Alju06g1286 573 Pfam Ring finger domain 124 167 IPR001841 -
Alju06g1286 573 SUPERFAMILY RING/U-box 106 175 - -
Alju06g1286 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 173 IPR013083 -
Alju06g1286 573 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Alju06g1286 573 SMART ring_2 125 166 IPR001841 -
Alju06g1286 573 MobiDBLite consensus disorder prediction 1 23 - -
Alju06g1286 573 FunFam RING-H2 finger protein ATL46 86 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1286 Alju-ChrAlju06 13653550 13658556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1286 29 451 C3H Transcription Factor Family AT2G18650 50.901 1.35e-104 320
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g1286 06 13653550 13658556 Alju06g1286 06 13653550 13658556 ECH