LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju06g1260	ATGGGATCCAACCTAAGTTGCTGTGGTTCAGACAAGGTGGAAGAAGTGCCAAGATCAGGTAGTGTGGCGAGCAACAACAGTAATTCATGGAGAATATTCACATACAAGGAGTTGCATGCAGCCACAAATGGTTTCAGTGAGGATTGTAAACTTGGTGAAGGTGGCTTTGGGAGTGTCTACTGGGGAAAAACCACTGACGGTCTCCAGATAGCAGTGAAGAAACTGAAAGCGATGAACTCAAAGGCAGAGATGGAATTTGCAGTAGAAGTAGAAGTTCTGGGGAGAGTGAGGCACAAGAACTTGCTAGGGCTAAGAGGTTACTGCGCCGGCGACGAACAACGACTCATAGTGTACGATTACATGCCAAATCTCAGCCTTCTATCTCACCTCCATGGCCAGTTCGCTAATGAAGTCCAGCTTGACTGGAAAAGAAGAATGAACATCGCCATCGGCTCTGCTCAAGGCCTATTGTACTTGCATCACGAGGTTACGCCTCATATAATCCACAGAGATATAAAGGCAAGCAATGTTCTTTTGAACTCAGACTTCGAGCCACTAGTTGCTGATTTTGGGTTTGCAAAGCTAATCCCAGAAGGGGTAAGCCATCTAACGACCCGTGTGAAGGGTACATTAGGGTACTTGGCTCCTGAGTATGCCATGTGGGGTAAGGTATCCGAAAGTTGTGATGTTTATAGTTTTGGAATTCTTCTTCTAGAACTGGTCACAGGAAGAAAGCCCATAGAGAAGCTACCAGGAGGCCTAAAGAGAACCATAACTGAGTGGGCTGAACCTTTCATAAGCAAAGGCAAGTTCGGGGACATGGTGGATCGAAAACTTCGAGGAAACTTCGACGAGCGACAAGTTGAGCAGATGATCAATGTGGCTGCACTTTGTGTTCAGAGTGAGCCTGATAAGAGACCAAACATGAAGCAAGTGGTTAATTTGTTAAAAGGGTATGATGCTGATCATGGGAAGGTGATGAAGACGAGGATTGACAGTATTAAGTATAATGAACAGCTTATGGAGCTTGATCAGAATAGTGATGATGATGATGAAGATGAAACTAATGGTGGGTATGGTGTTTTTAGTGCTCTTGAGGTTCAAAAGATGCATGATCCTTACAAGCGTCATGGTGATGCAAAAATGGCGAAACCTGCAATTTGA	1164	0.4476	MGSNLSCCGSDKVEEVPRSGSVASNNSNSWRIFTYKELHAATNGFSEDCKLGEGGFGSVYWGKTTDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCAGDEQRLIVYDYMPNLSLLSHLHGQFANEVQLDWKRRMNIAIGSAQGLLYLHHEVTPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGLKRTITEWAEPFISKGKFGDMVDRKLRGNFDERQVEQMINVAALCVQSEPDKRPNMKQVVNLLKGYDADHGKVMKTRIDSIKYNEQLMELDQNSDDDDEDETNGGYGVFSALEVQKMHDPYKRHGDAKMAKPAI	387

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju06g1260	387	Gene3D	Transferase(Phosphotransferase) domain 1	121	343	-	-
	Alju06g1260	387	ProSiteProfiles	Protein kinase domain profile.	45	326	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju06g1260	387	SMART	serkin_6	45	316	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju06g1260	387	MobiDBLite	consensus disorder prediction	1	23	-	-
	Alju06g1260	387	CDD	STKc_IRAK	51	318	-	-
	Alju06g1260	387	FunFam	PTI1-like tyrosine-protein kinase At3g15890	121	334	-	-
	Alju06g1260	387	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	167	179	IPR008271	GO:0004672\|GO:0006468
	Alju06g1260	387	SUPERFAMILY	Protein kinase-like (PK-like)	26	325	IPR011009	-
	Alju06g1260	387	PANTHER	OS01G0253100 PROTEIN	25	320	-	-
	Alju06g1260	387	FunFam	PTI1-like tyrosine-protein kinase At3g15890	18	120	-	-
	Alju06g1260	387	Pfam	Protein tyrosine and serine/threonine kinase	49	316	IPR001245	GO:0004672\|GO:0006468
	Alju06g1260	387	ProSitePatterns	Protein kinases ATP-binding region signature.	51	74	IPR017441	GO:0005524
	Alju06g1260	387	Gene3D	Phosphorylase Kinase; domain 1	18	120	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju06g1260	Alju-ChrAlju06	13053460	13055747	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju06g1260	1	369	Trihelix Transcription Factor Family	AT1G70460	43.045	1.55e-96	301

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XV	Alju06g1260		PK_Tyr_Ser-Thr	9.5e-44	CL0016