Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1259 ATGATGCTTTCTTCTTCACCTAGTAAAATACTAATTGGTCTGTCCTTAGACCCAGACGATAGCAGCGAACTTCTCTCATGGGCAATTAGAGTCCTAGCCAATCCTAATGACACCATTGTTGCCTTGCATGTTCTTGTTTCTAAGGATAAGAAGAAGAAGAGGAAGAAGCGTGGTTCAATAACAAGAAGGCAGTCACAACTTCGTCAGGCTAAAGCCTATGTCATATCTCTGCTTGGTGAATTTGCAAAGATGTGTTGGTCTAAGCAGGTGAATCTGGAAGCCAAAGTGGCATTTAGTTCTAATGTAGGTGGAGGTTTGGTTGAAGAAGCCAAGTCAATATCTGCTGACTATCTTCTTCTTCGTGGTTCTAGAAACCAGCCCAACAAGAATCAGGCCTCTAATGAAATCACCAAGTACTGCTATGAGAATGTTCAGGAAAGCTGCACTGTAGTCTCAGTTGGGAAAAGCTCAAAATCCAGTTTTACAGATTCTCAAGATAATTATGAATCAAACTCAGGGTACAGGGGAGCCTCCCCTGTTTTGAAGGCTTTTATTTCAGACTCGAACTCAAAGACTCGAACACGTTCTCCAAGAACAGTATTGGAGGCACTTGAGGGACAATCTAACAGCACAGAAGATGACACATTTAGCACAAGGGTCTCAAGCATCACAGACACTCCCTCAACAGGTTCTAAAATGAAAAGCCATTCCAATAATTTAAGGAAACCACAGTCACCATTTAGACGCATAGCCTCCCTCCTTGCCTCTCCACTTAGAAGGAAAAACTCCAAAAAGTCCCAAAATGAAAAGAGACAACCTTTGTTAAAATGCTTCAGCTATGAGGCGATCTCCAACGCCACAAAAGGCTTCCACCAAGATAATTTGGTGGGACGAGGTGGATACTCTGAAGTATACAGAGGAGATCATTGTGATGGACAAACTATTGCGGTGAAAAGGTTGTCCAAGGACAACAAGGATGCTAACAAGGAAAAGGAGTTCCTTATGGAAATAGGAGTCATTGGACATGTCTGTCATCCTAATACTGCATCTTTAGTTGGTTGCTGTATTGAAAATGGACTCTACCTAATTTTCAAGTACTCCCAAAATGGAAACTTGGCCACTGCATTGCATGGTAAATCAGGAACTTCACTTGACTGGCCAGTTAGATACAAAATCGCCATTGGAGTAGCAAGAGGGCTGCATTATCTCCACAAGTGTTGCAAACGAAGAATAATTCATCGTGACATTAAAGCCTCCAATGTGCTTCTGGGTCCAGATTATGAACCACAGATTACTGATTTTGGGCTCGCAAAGTGGCTTCCAAACAAGTGGACCCACCATGCTGTAATACCAGTGGAAGGCACGTTTGGGTACTTGGCACCAGAGTCCTTCATGCATGGAATAGTGGATGAGAAAACTGATGTTTATGCATTTGGGATTCTTCTTCTGGAGATTATAACTGGAAGAAGACCTGTTGATTCTAAGAAACAGAACCTTCTCCTTTGGGCTAAGCCTCTGATGGAATCAGGGAACTTTAAGGAGCTAGCTGATCCAAGAATGGTAGGTGTATATGATGAAGAGGAACTGAACAGAATAGTGGTCACAGCTTCATACTGTGTGAAACAATCTCCACTTTGGCGTCCCTCAATGAGCGAGGTGTTGGAACTGCTAACTAATGGAGAAGATAGTGAGTCTGGGAATAGCTGGAAGATCCCACAGTTCACATCTGATGAATTGGATGATTATTCTATGGCGTTTGGATATGAAGTGCCTTCTGATATATCTCTTGAGGACTTTTTGTGA 1803 0.4248 MMLSSSPSKILIGLSLDPDDSSELLSWAIRVLANPNDTIVALHVLVSKDKKKKRKKRGSITRRQSQLRQAKAYVISLLGEFAKMCWSKQVNLEAKVAFSSNVGGGLVEEAKSISADYLLLRGSRNQPNKNQASNEITKYCYENVQESCTVVSVGKSSKSSFTDSQDNYESNSGYRGASPVLKAFISDSNSKTRTRSPRTVLEALEGQSNSTEDDTFSTRVSSITDTPSTGSKMKSHSNNLRKPQSPFRRIASLLASPLRRKNSKKSQNEKRQPLLKCFSYEAISNATKGFHQDNLVGRGGYSEVYRGDHCDGQTIAVKRLSKDNKDANKEKEFLMEIGVIGHVCHPNTASLVGCCIENGLYLIFKYSQNGNLATALHGKSGTSLDWPVRYKIAIGVARGLHYLHKCCKRRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPESFMHGIVDEKTDVYAFGILLLEIITGRRPVDSKKQNLLLWAKPLMESGNFKELADPRMVGVYDEEELNRIVVTASYCVKQSPLWRPSMSEVLELLTNGEDSESGNSWKIPQFTSDELDDYSMAFGYEVPSDISLEDFL 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1259 600 Gene3D Transferase(Phosphotransferase) domain 1 368 575 - -
Alju06g1259 600 Coils Coil 317 337 - -
Alju06g1259 600 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 367 571 - -
Alju06g1259 600 Pfam Universal stress protein family 9 151 IPR006016 -
Alju06g1259 600 Gene3D Phosphorylase Kinase; domain 1 250 366 - -
Alju06g1259 600 PANTHER OS08G0249100 PROTEIN 57 570 IPR046958 -
Alju06g1259 600 MobiDBLite consensus disorder prediction 188 247 - -
Alju06g1259 600 MobiDBLite consensus disorder prediction 188 245 - -
Alju06g1259 600 CDD USP_Like 9 124 - -
Alju06g1259 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Alju06g1259 600 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 121 - -
Alju06g1259 600 Pfam Protein tyrosine and serine/threonine kinase 292 556 IPR001245 GO:0004672|GO:0006468
Alju06g1259 600 ProSiteProfiles Protein kinase domain profile. 290 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju06g1259 600 FunFam Putative receptor-like serine/threonine-protein kinase 257 366 - -
Alju06g1259 600 SUPERFAMILY Protein kinase-like (PK-like) 266 557 IPR011009 -
Alju06g1259 600 Gene3D HUPs 2 153 IPR014729 -
Alju06g1259 600 SMART serkin_6 290 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju06g1259 600 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1259 Alju-ChrAlju06 13037008 13039906 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1259 278 596 Trihelix Transcription Factor Family AT1G70460 40.059 2.41e-73 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Alju06g1259 PK_Tyr_Ser-Thr 3.6e-41 CL0016