Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1258 ATGGGGATTGAGAGAGGAGGCCTTAAAGGCTTACGTGGCGGGTGGAGCGTCGCCGCGAAGCCATGCGACTCCTGCAAATCGGCGGCCTCCGCCGTGTTCTGCCGCGCCGATTCCGCCTTCCTCTGCATGGCCTGTGACACCCGAATTCACTGTGGTGAAAAGCTTGGTTCCCGCCATGAACGTGTTTGGATGTGTGAGGTTTGTGAGCAGGCCCCTGCTTCAGTCACTTGCAAGGCCGACGCCGCCGCTCTCTGCGTCACCTGCGATTCCGACATCCACTCCGCCAATCCCCTCGCTCGCCGCCACGAGCGGGTCCCGGTGGAACCCTTTTATGACTCTGCTGACTTGGTGGCGAAATCCTCTGCCTCTGTTGCCGCTTTCAACTTCTTCGTGCCCAACAATAACGGAATTTGCTCCGATGGGTTTCAAACTGAAGATCCTGAACCAGTTCCGTGGATGGTCCCTAACCACCAGAACTTCAATTCCAAGGTGGTGGGTACTCCGGAAGTCAAATCCGGCGACATGTTCTTCTCGGAAATGGATCCCTTCATGGATTTCGATTACTCAAATTCTTATCAGAATAACAACAATCACGGCCCGGCGAACGACAGCGTTGTGCCAGTTCAAAACAAACCTGTTACGGCTCCGATGATCAATCAATCGGAGAGTTGCTTCGATCTTGATTTTTGCAGATCGAAGCTTTCTTCTTTTGGCAGCTACCCAAGCCAAAGTGTTTCATCCTCTTCGCTTGACGTTGGAGTTGTACCAGACTCAGTGTCAGAAATGTCGTTCTCGTTGGGGCGAAACATGAGCAACAGCTCTGAATCGGGCGGAATCGGGTCAGCAGGTAACAACCAGGCGACCCAACTGGGCGGGATGGACCGGGAAGCGAGGGTGTTGAGGTACAGAGAGAAAAGGAAGAACCGGAAGTTCGAGAAAACCATCCGGTACGCTTCGAGGAAAGCATACGCGGAGACCCGACCCAGGATCAAGGGCCGGTTCGCTAAACGGAGCGAAGCCGAGTCGGAGGTAGACCCGGTGTACAGCCCCGTCAGCACGGGGGGTCTGATGATGGACGCTCAGTACGGCGTCGTACCATCGTTTTAA 1107 0.5492 MGIERGGLKGLRGGWSVAAKPCDSCKSAASAVFCRADSAFLCMACDTRIHCGEKLGSRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFYDSADLVAKSSASVAAFNFFVPNNNGICSDGFQTEDPEPVPWMVPNHQNFNSKVVGTPEVKSGDMFFSEMDPFMDFDYSNSYQNNNNHGPANDSVVPVQNKPVTAPMINQSESCFDLDFCRSKLSSFGSYPSQSVSSSSLDVGVVPDSVSEMSFSLGRNMSNSSESGGIGSAGNNQATQLGGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSEAESEVDPVYSPVSTGGLMMDAQYGVVPSF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1258 368 CDD Bbox1_BBX-like 65 107 - -
Alju06g1258 368 CDD Bbox1_BBX-like 21 64 - -
Alju06g1258 368 MobiDBLite consensus disorder prediction 266 291 - -
Alju06g1258 368 ProSiteProfiles CCT domain profile. 295 337 IPR010402 GO:0005515
Alju06g1258 368 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Alju06g1258 368 MobiDBLite consensus disorder prediction 266 296 - -
Alju06g1258 368 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Alju06g1258 368 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 346 IPR045281 GO:0009909
Alju06g1258 368 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Alju06g1258 368 Pfam CCT motif 295 337 IPR010402 GO:0005515
Alju06g1258 368 SMART bboxneu5 65 107 IPR000315 GO:0008270
Alju06g1258 368 SMART bboxneu5 17 64 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1258 Alju-ChrAlju06 13013080 13014290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1258 1 368 C2C2-CO-like Transcription Factor Family AT5G57660 54.400 1.82e-122 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Alju06g1258 zf-B_box 4.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g1258 06 13013080 13014290 Alju06g1258 06 13013080 13014290 ECH