Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1238 ATGGGTAGAGCTCCATGCTGTGACAAGGCTAACGTCAAGAAAGGACCTTGGTCCCCCGAAGAAGATGCTAAACTCAAAGCCTATATCGAAAAGTATGGAACTGGAGGCAACTGGATTGCTCTTCCTCCAAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTGAGATGGCTAAATTATCTGAGGCCTAATATTAAGCATGGTGGGTTTACTGAAGAAGAAGACAACATCATCTGTAGCCTTTACATTAGCATCGGAAGCAGGTGGTCCATAATCGCAGCACAGCTACCAGGAAGGACAGACAATGACATAAAAAACTACTGGAACACAAGATTGAAGAAGAAGTTACTGGGAAGAAGAAAACAATCATCGTCTGGTTTCAATAATAATAATCCACGAAACGGGTCAGGGCACGATCCAGACGAGTCTAATGCCCTAAGCAACTCGGCTCTTGAAAGGCTTCAACTTCATATGCAGCTTCAAGGCCTCCAAAACCAAAACCCTTTCTCTAATTTCTACAACAATCCTGCACTACTCTGGCCCACCACTAATACGCTCCATCCTCTGATTATGAGTGGTAATAATAGTAATAATAAAAACCCTGATGATCAGTCTCATAAAGATCAACAATTCTACAAACCAACTGTTCCATCTAATACCTCTCTTCATCATCAACAAGAACATGAGAAGATCAATGGTTCTTCTTCACAGGTTGACATGTCTTCTTCTGTTCCTCTCGTGGCGGCGGGGATTGATCCAATGGATTCTAATAATGTGGAGAATGATCAGCAAGTTTCTGATGCACTTCAAGCTGAGTTGAATGAGATTCTCAGAAATAATAACAGATCAATGATCAGTTACAATCATCATCATCAAGATCAGATTCAGATGGCTGATTTTGATTGTTTTGCAGAAATGAATTCGAGTGATTCCAATAAGGACAGCTTGATGAATATGTGGTGGGCCAATGATTTAATGGCGAAATCAGTATCTTCCAGCTCTTGGGGTTCAAGTACCATAAGCACAAGTACAGCTCCTGTTCTTCAGCCAGAAGAAGGGATGTTCCAAGATAATTATGAACTCGTGGCCGGTTACAGTTTGTAG 1107 0.4155 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEKYGTGGNWIALPPKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSSSGFNNNNPRNGSGHDPDESNALSNSALERLQLHMQLQGLQNQNPFSNFYNNPALLWPTTNTLHPLIMSGNNSNNKNPDDQSHKDQQFYKPTVPSNTSLHHQQEHEKINGSSSQVDMSSSVPLVAAGIDPMDSNNVENDQQVSDALQAELNEILRNNNRSMISYNHHHQDQIQMADFDCFAEMNSSDSNKDSLMNMWWANDLMAKSVSSSSWGSSTISTSTAPVLQPEEGMFQDNYELVAGYSL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1238 368 MobiDBLite consensus disorder prediction 119 146 - -
Alju06g1238 368 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Alju06g1238 368 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Alju06g1238 368 MobiDBLite consensus disorder prediction 191 240 - -
Alju06g1238 368 FunFam Transcription factor RAX3 7 68 - -
Alju06g1238 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Alju06g1238 368 CDD SANT 71 113 IPR001005 -
Alju06g1238 368 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Alju06g1238 368 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Alju06g1238 368 PANTHER OS09G0431300 PROTEIN 1 296 - -
Alju06g1238 368 FunFam Transcription factor MYB36 70 137 - -
Alju06g1238 368 MobiDBLite consensus disorder prediction 122 146 - -
Alju06g1238 368 Coils Coil 260 280 - -
Alju06g1238 368 Gene3D - 70 137 - -
Alju06g1238 368 CDD SANT 16 62 IPR001005 -
Alju06g1238 368 Gene3D - 7 68 - -
Alju06g1238 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Alju06g1238 368 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Alju06g1238 368 SMART sant 13 64 IPR001005 -
Alju06g1238 368 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1238 Alju-ChrAlju06 12656204 12657509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1238 1 237 MYB Transcription Factor Family AT5G57620 66.393 1.24e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju06g1238 Myb_DNA-binding 3.8e-13 CL0123