Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1231 ATGAGCTTCCGTTCTTCTTCATCTTCTAACACTTCTTTTCATCATCATCCTTATCCTTCAAACGATATCAATAATCTTAACCTAGATCTTCTCCTTGAGCTTTCTTCATCTTCTTCTAATTCATCTTCTCCTCCATCAGCAAATTACATTAGTAGTAGTATCATGGAGCCTCGGGTTTTCTCGTGCAACTATTGCCAGAGAAAGTTCTACAGCTCACAAGCTCTTGGAGGTCACCAGAATGCACACAAGTTGGAGAGGACACTGGCCAAGAAGAGCAGAGAACTCAGTTCAATACACAATACTTTTGGGCTCTCTACTACTGATCACAACAGCTCTGGCTCAAGCCGTCATGTTGCGCGTGTGGGCTCATCACTAAGCCACGGTCAAGTTGGTGGTGGGGTTAGCTATGAAAGAAGAGAGTTTAACTATGGTGGTGGTTCCAATAACTTCAGGTCTTCTGGAAGTAATGTTGATGATCAGCAGGAAGATATTGGTCAACTTGACTTGTCTTTAAGGCTTTAA 522 0.4253 MSFRSSSSSNTSFHHHPYPSNDINNLNLDLLLELSSSSSNSSSPPSANYISSSIMEPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSIHNTFGLSTTDHNSSGSSRHVARVGSSLSHGQVGGGVSYERREFNYGGGSNNFRSSGSNVDDQQEDIGQLDLSLRL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1231 173 MobiDBLite consensus disorder prediction 101 122 - -
Alju06g1231 173 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Alju06g1231 173 MobiDBLite consensus disorder prediction 101 131 - -
Alju06g1231 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Alju06g1231 173 FunFam Zinc finger protein 2 35 107 - -
Alju06g1231 173 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 118 IPR044246 GO:0009788
Alju06g1231 173 Gene3D Classic Zinc Finger 48 114 - -
Alju06g1231 173 MobiDBLite consensus disorder prediction 147 173 - -
Alju06g1231 173 MobiDBLite consensus disorder prediction 147 163 - -
Alju06g1231 173 SUPERFAMILY beta-beta-alpha zinc fingers 57 87 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1231 Alju-ChrAlju06 12592578 12593099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1231 19 173 C2H2 Transcription Factor Family AT5G57520 51.266 1.85e-26 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju06g1231 None None None