Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1201 ATGGAGTGGGACAGCAATTCGGATCTAAGCGGCGACGAGGAGGAGACCTTCGCGCTCAACGATGGGGGCCCACTTCCCTTCCCGGTGGAGAACTTGCTCCAAACGACTCCCTGTGGGTTCGTCGTCACTGATTCGCTCGAGCCTGACCACCCTATTATTTATGTCAATACTGTGTTCGAGATGGTCACTGGGTATCGGGCAGAGGAAGTACTTGGTCGCAACTGCCGATTCCTGCAGTGTCGTGGTCCGTTTGCTAAAAGAAGGCATCCGTTGGTGGACTCTGCTGTAGTTTCAGAAATTAGGAGATGTCTTGATGAAGGGATTGAGTTCCAAGGTGAATTATTGAACTTTAGGAAAGATGGATCTCCACTGATGAACAGATTGCGGCTGACACCTATATATGGAGATGATGAGACTATAACACATGTAATTGGAATCCAGTTCTTCACAGAGGCAAATATTGATCTTGGTCCTGTTCTGGGTCCTGCAATGAAATCATCTGATCAATTTCGTAGTGTTCTTTCAGCATTGAGTCCTCTTCAAGTTGGGGACCGTAATGTATCACGTGGAGTTTGTGGGATTCAGCAATTGAGTGATGAGGTTATATCTCTCAAGATACTTGCCCGCCTAACTCCAAGAGATATTGCTTCTGTTGGCTCTGTCTGCAGGCGATTTTATGAACTGACAAAAAATGAAAATCTTTGGAGAATGGTGTGTCAAAATGCATGGGGTAGTGAAACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTGGGATGGGTTCGACTGGCAAGGGAGTTGACTACTCTTGAAGCAGCAGCATGGAGGAAGCTGACTGTTGGAGGTGCTGTCGAACCCTCACGCTGTAACTTTAGTGCCTGTGCAGTTGGTAATAGGGTTGTCTTATTTGGTGGTGAAGGGGTTAACATGCAGCCTATGAATGACACCTTTGTGCTAGATCTAAACTCGAAAAATCCAGAGTGGCAACACGTCCAGGTGAGTTCTCCTCCTCCTGGTCGTTGGGGCCACACAATTTCCTGTGTGAATGGTTCTAATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGACGTGTTTGTGCTGGACCTGGATGCCAAACCTCCTACTTGGCGCGAAATATCTGGATTGGCACCTCCGCTTCCAAGATCATGGCACAGCTCCTGTACTCTTGATGGTACCAAGTTGATAGTTTCTGGTGGCTGTGCAGATTCTGGAGTACTTTTGAGTGACACATTCCTCCTTGATCTGTCCATGGAGAAACCAGTCTGGAGAGAGATACCTGTGGCATGGACTCCGCCTTCTCGTCTGGGTCACACTCTGTCTGTTTATGGTGGTAGGAAAATACTAATGTTTGGAGGTCTTGCTAAGAGTGGGCCCCTGCGGTTCCGTTCCAGTGATGTATTCACCATGGACTTGAGTGAGGAGGAACCATGTTGGAGATGTGTAACTGGGAGTGGAATGCCCGGTGCTGGGAATCCTGGGGGCATAGCCCCCCCTCCTAGACTTGATCATGTCGCGGTTAGTCTCCCAGGTGGGAGAATCCTGATATTTGGTGGATCTGTTGCAGGTCTTCACTCTGCCTCCCAGCTTTACATCCTGGATCCAACCGAAGAGAAACCTACATGGAGAATCCTGAACGTACCCGGGCGGCCTCCTAGATTTGCTTGGGGACATAGCACGTGTGTTGTTGGAGGTACAAGAGCTATTGTACTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGCGAGCTCCATGAGCTTTCTCTGGCAAGTTCTGTAAATTAG 1821 0.4882 MEWDSNSDLSGDEEETFALNDGGPLPFPVENLLQTTPCGFVVTDSLEPDHPIIYVNTVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSAVVSEIRRCLDEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFTEANIDLGPVLGPAMKSSDQFRSVLSALSPLQVGDRNVSRGVCGIQQLSDEVISLKILARLTPRDIASVGSVCRRFYELTKNENLWRMVCQNAWGSETTRVLETVPGARRLGWVRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSKNPEWQHVQVSSPPPGRWGHTISCVNGSNLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVN 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1201 606 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 27 603 - -
Alju06g1201 606 CDD PAS 36 146 IPR000014 -
Alju06g1201 606 FunFam Adagio protein 1 191 238 - -
Alju06g1201 606 NCBIfam PAS domain S-box protein 32 146 IPR000014 -
Alju06g1201 606 CDD F-box_AtADO-like 193 239 - -
Alju06g1201 606 Gene3D - 268 491 IPR015915 GO:0005515
Alju06g1201 606 FunFam Putative LOV domain-containing protein 267 471 - -
Alju06g1201 606 SUPERFAMILY Galactose oxidase, central domain 277 591 IPR011043 -
Alju06g1201 606 Gene3D - 492 605 IPR015915 GO:0005515
Alju06g1201 606 Gene3D PAS domain 22 158 - -
Alju06g1201 606 Pfam F-box-like 202 240 IPR001810 GO:0005515
Alju06g1201 606 Pfam PAS domain 37 147 IPR000014 -
Alju06g1201 606 Pfam Kelch motif 447 498 IPR011498 GO:0005515
Alju06g1201 606 Pfam Kelch motif 514 561 IPR011498 GO:0005515
Alju06g1201 606 ProSiteProfiles PAS repeat profile. 29 107 IPR000014 -
Alju06g1201 606 Pfam Galactose oxidase, central domain 354 401 - -
Alju06g1201 606 Pfam Galactose oxidase, central domain 290 340 - -
Alju06g1201 606 FunFam Putative LOV domain-containing protein 472 605 - -
Alju06g1201 606 Gene3D - 189 238 - -
Alju06g1201 606 FunFam Adagio protein 1 27 158 - -
Alju06g1201 606 SUPERFAMILY PYP-like sensor domain (PAS domain) 36 147 IPR035965 -
Alju06g1201 606 SUPERFAMILY F-box domain 186 256 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1201 Alju-ChrAlju06 12199638 12205992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1201 33 148 AGC Kinase Gene Family AT5G58140 34.483 8.28e-15 76.3