Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1148 ATGGAAGATGACGATGGATCATGCAACACAGGGCTGAGCCTTGGCCTGGGAATAGGAGGGTATGTGCCAAAGAAGAAGAAGCAGATAAGAGAGAACAATCAAGTGGGTCACTGCTTGGACCTACCCTTTGATGAACCTTATCGTCCCAAAAAAGGAGAAGAAACCGTTAATAATACTAGAGATCATGAAGAAGAACAAGGATTGTCCAGAATGAAGAGAATGGATCATGATGATAACGCCGCCACCGACAACTCCAGAAAGAAACTGAGGCTCACAAAGGATCAATCGGCGTTTCTTGAAGAAAGCTTCAAGCTACACACCACTCTTAACCCTGCTCAGAAACATTCTCTTGCTGAGAAATTGAATCTGAGACCAAGACAGGTCGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAGACGGAGATAGACTGCGAGTTCTTGAGGAAGTGCTGTGAGAATCTGAGAGACGAGAATCGGAGGTTGAAGAAAGAGTTACACGAGTTACGTTCTCAGAAGGTTGGCACGACGACGACCACAACGTCGCCGCCGCCACCGTTGTCCATTCAACTCTCAAAGATGACCGCCGTGACGAAGACAACGTGTTCGTCGTGTCAGAAACCATTCAAAGTGAATTATGAAGCAAATAATAATAACAACTACTATAAAGACAGTGGGAAGCATAAATTGGAAAGCGTGGCCTTAGATTGCTATGTGGGGTAA 732 0.4522 MEDDDGSCNTGLSLGLGIGGYVPKKKKQIRENNQVGHCLDLPFDEPYRPKKGEETVNNTRDHEEEQGLSRMKRMDHDDNAATDNSRKKLRLTKDQSAFLEESFKLHTTLNPAQKHSLAEKLNLRPRQVEVWFQNRRARTKLKQTEIDCEFLRKCCENLRDENRRLKKELHELRSQKVGTTTTTTSPPPPLSIQLSKMTAVTKTTCSSCQKPFKVNYEANNNNNYYKDSGKHKLESVALDCYVG 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1148 243 CDD homeodomain 86 143 IPR001356 GO:0003677
Alju06g1148 243 Pfam Homeobox associated leucine zipper 142 175 IPR003106 GO:0006355|GO:0043565
Alju06g1148 243 Pfam Homeodomain 86 140 IPR001356 GO:0003677
Alju06g1148 243 SMART halz 142 185 IPR003106 GO:0006355|GO:0043565
Alju06g1148 243 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Alju06g1148 243 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Alju06g1148 243 SMART HOX_1 84 146 IPR001356 GO:0003677
Alju06g1148 243 SUPERFAMILY Homeodomain-like 75 143 IPR009057 -
Alju06g1148 243 Coils Coil 141 175 - -
Alju06g1148 243 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 219 - -
Alju06g1148 243 MobiDBLite consensus disorder prediction 43 86 - -
Alju06g1148 243 Gene3D - 79 147 - -
Alju06g1148 243 MobiDBLite consensus disorder prediction 37 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1148 Alju-ChrAlju06 11206105 11207082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1148 75 210 Homeobox Transcription Factor Family AT4G37790 61.029 2.12e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju06g1148 Homeodomain 1.4e-15 CL0123