Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1125 ATGGAGAATATCGGCGAAGAGTACAGGCATTACTGGGAAACCAACCGCTTCCTTCAAACCGAAGAGCTCGACAGTTGGGGATGGGACGAGGCCTTCTCCGGTTACTACGATTCCAGCTCCCCCGACGGCGCCGCCTCCTCCGCCGCCTCCAAGAACATTGTCTCCGAGCGCAACCGCCGCAAGAAGCTCAACGAGAGACTCTTTGCTCTCAGAGCCGTCGTCCCCAACATTAGCAAGATGGATAAGGCTTCCATAATCAAAGACGCAATTGATTACATCCAACACTTGCACGAACAGGAGAGGAATATTGAGGCGGAGATATCGGAGCTTGAATCTGGGAAACAGATCAAGCAGAACTCAAGCGATATCGATTACGAGCAAGACCTCCCTGTGTTGCTCAGGTCCAAGAAGAAGAAAACAGAGCAGCAGCAGCTTTACGATACTGTCATCAGTTCAAGAAATTCCCCGATCGAAGTCCTCGAGCTAAAGGTAACGTACATGGGAGAGAAGACGATTGTGGTGAGTTTGACATGTAGTAAAAGGACGAACACAATGGTGAAACTGTGCGAAGTGTTCGAATCTCTGAAGCTGAAGATCGTTACGGCCAACATAACTTGTTTCTCAGGCAGGCTTGTGAAGACAGTCTTCGTGGAGGCAGAGGAAGAAGAGAAAGATCTGTTGGAGATAAGAATCCAAACGGCCATTGCAGCTCTTAATGATCCTGATAGCCCTATGAGCATCTAA 744 0.4906 MENIGEEYRHYWETNRFLQTEELDSWGWDEAFSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIDYIQHLHEQERNIEAEISELESGKQIKQNSSDIDYEQDLPVLLRSKKKKTEQQQLYDTVISSRNSPIEVLELKVTYMGEKTIVVSLTCSKRTNTMVKLCEVFESLKLKIVTANITCFSGRLVKTVFVEAEEEEKDLLEIRIQTAIAALNDPDSPMSI 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1125 247 Coils Coil 93 113 - -
Alju06g1125 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 112 IPR036638 GO:0046983
Alju06g1125 247 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 115 - -
Alju06g1125 247 SMART finulus 53 102 IPR011598 GO:0046983
Alju06g1125 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Alju06g1125 247 Gene3D - 44 113 IPR036638 GO:0046983
Alju06g1125 247 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 232 - -
Alju06g1125 247 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Alju06g1125 247 Coils Coil 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1125 Alju-ChrAlju06 10838765 10844862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1125 1 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 63.801 1.50e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju06g1125 HLH 4.8e-12 No_clan