Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1123 ATGACGGAGCAGACCGAGTTCAGTGTTCTATGCAGTTTCTTCACATGGACACAGAGAAGCAAGTCATCCGCCCTGAAGCGCTCCAAGTTCCGCAAATTCCTCGATACCTTCTGCAAAGACAGAAATTACTTCAGTGCAATTAGGTTGATTCTTCCCAACCTCGACCGGGAGCGAGGCTCCTATGGCCTCAAGGAGTCTGTTCTCGCTACCTCCCTCATTGACGCTCTTGGGATGTCTAGGGAGTCCGAGGACGCTCTACACCTCATCAATTGGCGCAAAGGTGGTGCGAAGACTGGTGCCAATGCCGGAAATTTTGCTCTTGTCGCTGCTGAGGTGCTGCAGCGTAGGCAAGGGTTGGCATCTGGTAGATTGACAGTAAGGGAGTTAAATGAGTTGCTTGATAAACTAGCTTCAAGTGAGAACAGGGCTGAGAAGACTTCAGTTCTTTCTACCCTTATTCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATACTCAAAGATCTAAAGCTTGGAATTAGTGAAAAGAGCATTTTCCATGAATTTCACCCTGATGCTGAAGACTTGTTTAATGTAACTTGTGACCTGAAATTAGTTTCTGAAAAGCTAAAGGATCGGAACCAACGTCATAAGAGACAGGATATTGAAGTTGGAAAAGCTGTGCGTCCTCAACTAGCAAAGAGAGTTGGTAGTGCTAGTGAAGCGTGGAAAAAGCTTCATGGGAGGGAAGTTGTTGTCGAGTGCAAGTTTGATGGTGATCGAATCCAAATACATAAAAATGGAACAAATATACATTTCTTCTCAAGGAACTTTCTTGACCATTCAGAATATCAACATGGGATGTCAGACATCATACTACAAAATATTCTTTTTGACAGGTGTATTCTTGATGGTGAAATGTTGGTTTGGGATAAATCCTTGAACCATTTTGCTGAATTTGGTTCAAATCAGGAAATCGCAAAGGCAGCAAGGGACGGGCTTGATAGTGATAGACAGTTGTGTTACGTTGCGTTTGATATCCTTTATGTTGGAGATACAAGCGTAATACACCAGACTTTGAAGGAAAGGCACGAGCTTCTCTGTAAAGTTGTTAGGCCCTTAAAGGGTAGTTTGGAAATTTTAATACCTAATGGTGGCCTCAACTCTAATTTTCCATCTGGGGAACCTTGTTGGTCATTTATTGCGCATAATGTGGATGAAGTTGAGAGATTCTTCAAAGAAACTGTTGACAATAGAGATGAGGGCATTGTTCTGAAAGACCTTGGTTCCAAATGGGAACCCAGCGACCGTAGTGGAAAGTGGATGAAATTGAAGCCAGAGTATATACATGCTGGTTCTGATCTGGATGCACTTATCATAGGTGGCTATTATGGCTCTGGACGAAGAGGAGGGGAGGTTGCTCAATTCTTGGTAGGCCTAGCAGAGCGTCCCTCCCCCAGTGCACATCCCAAGCGATTTATCTCATTTTGTAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGATGCCCTAGTAACGAAACTGAAACCATATTTCAGGAAGTATGAATACCCAAAGAAGAGGCCACCAAGTTTTTATCAAGTCACTAACCATTCAAAAGAGCGGCCTGATGTGTGGATCGAGAGCCCTGACAAATCAATAATTCTTTCTATAACCAGTGACATTCGAACTATAGAATCTGAGGTATTTGCTGCACCTTACAGTCTGAGATTTCCTCGGATTGACAGGGTGAGATATGACAAACCCTGGTATGAATGTCTTGATGTGCAATCATTTATAGAACTCGTGCATTCTAGTAATGGCACCACAAAGGCAATCACAGACTATGGCGGCATGCAGGATAGTAAATCAAAACGCATGAAATCCTCTAAAAGGGAAGGGAAAAAAAACACGTCCGTTGTCCCTTCTCATTTAATTCAGACTGATGTTTCCAATGTTAAGGGGGGCTCCTTAATATTTTTGAATATGATGTTTTATTTCGTCAATGTGCCTCCATCCCATTCTCTTGATTCCTTGCATAAGATGATTGCTGAGAATGGGGGCACTTTCTCGATGAACTTGAACAATTCAGTCACCCATTGTGTTGCAGCAGATGGCAAGGGTTTTAAATTTGAAGCTGCAAAACGTCGCGGTGATATCATTCATTATAGTTGGGTAATAGATTGCTGTGCGCAAAAGAAGCTTATTCACTTACAGCCAAAGTACTTCCTTTTCATTTCTGAGCGCACAAAGAAGAAGTTATCTGAAGAAATTGATGACTTCTCAGACTCATACTACTTGAATCTCGATTGTGCGGACATCAAGAAGCTCTTGAGCAATATTCCCAGATCAAAAAAAGATGTCAGCACTATTGACTATTACAGGAAAAAGTACTGCCCAAAGGATAAGTGGTCTCTCTTTCAAGGATGCTGCATTTATTTCCACACTTTTTTACCACCTTCGAAAGGAGATTGGGAAGTTCTGTCGAGACTTTCACTGAGGAGATTGCAGTGTGAAATTCTCATGAGTGGCGGCAAAGTTACCGATAGTCCCACTTCTGCTACCCACTTTGTGGCCTTGTCAGTTCCAGGATATAATGTGGACTTTACAGAAATGTTAACGAGTTTCACTTCAGTCGAAGGAAAATTTCTTTTGAGCAAGCAGTTGCATGTTGTTGAATCTCAGTGGCTTGAAGATTGTTTGGATCAAGGCCGAAGATTACCAGAACAAACATATACATTGAAGCCCAGCGGAATGGAAGAACTAACTACTGAAGAGTGCAAACATGATTTGGCTTTAGAGGGTCATTGTGGGGGAGATAATGTAGAAGACCAAAATTCGTCACCTGTCTCTGAAAAGGGAAATCAGCTGAGAAGTGCAAGACCTGTTGATGAAAGTTTGGTCTCCCTGGAGAAGAGTGGCAAAAGGAAACGAGGAAGACCTGTAGGCAGAGGCAGTAAAATGGTTAAAACAGCCGGCAACCAAACTCGTCGATCACGAGCACGTATTGGGAAAAGGCCTGCGAAAATATGTGAATATGAAACAGATGTAAGTGGTTCTCATGATGAAAAACCATGTGAAGGTGAGATTGACTCGAGAGAATTCAGTCTTGACTCTCATAATGGCACAGAAGTCACCGAGACTGTGACTTCACAAAATCCGGAGCCATCAAAACGAGAAGGTGCAGTTAAGCAAGAGTTTTTTAAGGACGTTGAATGCGAGGAACATTCTGTTCCCGAAATTGAAATGACCGAGCAGCATGATGACCAAAACATTAGGACTGAACAACTGGAAGTTATGGCCGATCCGATACAGGCTATGCTTTTTAACATGTTTCCCAGTCTTGCGACAAAGAAAGTTGATGAAACAAAGAATGATGATGTTAAAGATGATAAGCCACCTGAAGAATTCAAAGGTAATGTTAAAGATGACAAGCTACCTGAGCAATTCAATGATAATGTTAAAGATGATAAGCCACCTGAGCAATCCAAATCCAGAGCTGAGCCTGCAAGGAAAAAGAAAGTTAGCTATAAGGATGTTGCTAATAAGCTACTTGAGGATTGGTAG 3555 0.4211 MTEQTEFSVLCSFFTWTQRSKSSALKRSKFRKFLDTFCKDRNYFSAIRLILPNLDRERGSYGLKESVLATSLIDALGMSRESEDALHLINWRKGGAKTGANAGNFALVAAEVLQRRQGLASGRLTVRELNELLDKLASSENRAEKTSVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVSEKLKDRNQRHKRQDIEVGKAVRPQLAKRVGSASEAWKKLHGREVVVECKFDGDRIQIHKNGTNIHFFSRNFLDHSEYQHGMSDIILQNILFDRCILDGEMLVWDKSLNHFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQTLKERHELLCKVVRPLKGSLEILIPNGGLNSNFPSGEPCWSFIAHNVDEVERFFKETVDNRDEGIVLKDLGSKWEPSDRSGKWMKLKPEYIHAGSDLDALIIGGYYGSGRRGGEVAQFLVGLAERPSPSAHPKRFISFCRVGTGLSDDELDALVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWIESPDKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKPWYECLDVQSFIELVHSSNGTTKAITDYGGMQDSKSKRMKSSKREGKKNTSVVPSHLIQTDVSNVKGGSLIFLNMMFYFVNVPPSHSLDSLHKMIAENGGTFSMNLNNSVTHCVAADGKGFKFEAAKRRGDIIHYSWVIDCCAQKKLIHLQPKYFLFISERTKKKLSEEIDDFSDSYYLNLDCADIKKLLSNIPRSKKDVSTIDYYRKKYCPKDKWSLFQGCCIYFHTFLPPSKGDWEVLSRLSLRRLQCEILMSGGKVTDSPTSATHFVALSVPGYNVDFTEMLTSFTSVEGKFLLSKQLHVVESQWLEDCLDQGRRLPEQTYTLKPSGMEELTTEECKHDLALEGHCGGDNVEDQNSSPVSEKGNQLRSARPVDESLVSLEKSGKRKRGRPVGRGSKMVKTAGNQTRRSRARIGKRPAKICEYETDVSGSHDEKPCEGEIDSREFSLDSHNGTEVTETVTSQNPEPSKREGAVKQEFFKDVECEEHSVPEIEMTEQHDDQNIRTEQLEVMADPIQAMLFNMFPSLATKKVDETKNDDVKDDKPPEEFKGNVKDDKLPEQFNDNVKDDKPPEQSKSRAEPARKKKVSYKDVANKLLEDW 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1123 1184 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Alju06g1123 1184 FunFam DNA ligase 1 218 - -
Alju06g1123 1184 Pfam ATP dependent DNA ligase C terminal region 465 584 IPR012309 GO:0003910|GO:0006281|GO:0006310
Alju06g1123 1184 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Alju06g1123 1184 MobiDBLite consensus disorder prediction 617 634 - -
Alju06g1123 1184 CDD Adenylation_DNA_ligase_IV 214 445 IPR044125 GO:0005524
Alju06g1123 1184 MobiDBLite consensus disorder prediction 1037 1054 - -
Alju06g1123 1184 SMART BRCT_7 800 900 IPR001357 -
Alju06g1123 1184 SMART BRCT_7 653 729 IPR001357 -
Alju06g1123 1184 FunFam DNA ligase 444 605 - -
Alju06g1123 1184 CDD BRCT_DNA_ligase_IV_rpt1 655 741 - -
Alju06g1123 1184 MobiDBLite consensus disorder prediction 1033 1057 - -
Alju06g1123 1184 NCBIfam ATP-dependent DNA ligase 61 598 IPR000977 GO:0003910|GO:0005524|GO:0071897
Alju06g1123 1184 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 442 - -
Alju06g1123 1184 SUPERFAMILY BRCT domain 791 912 IPR036420 -
Alju06g1123 1184 CDD OBF_DNA_ligase_IV 448 592 - -
Alju06g1123 1184 FunFam DNA ligase 220 443 - -
Alju06g1123 1184 ProSiteProfiles BRCT domain profile. 651 739 IPR001357 -
Alju06g1123 1184 SUPERFAMILY BRCT domain 655 741 IPR036420 -
Alju06g1123 1184 Gene3D BRCT domain 798 910 IPR036420 -
Alju06g1123 1184 Gene3D BRCT domain 666 779 IPR036420 -
Alju06g1123 1184 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Alju06g1123 1184 FunFam DNA ligase 666 780 - -
Alju06g1123 1184 MobiDBLite consensus disorder prediction 937 951 - -
Alju06g1123 1184 Pfam BRCT domain, a BRCA1 C-terminus domain 653 736 IPR001357 -
Alju06g1123 1184 MobiDBLite consensus disorder prediction 931 1000 - -
Alju06g1123 1184 SUPERFAMILY Nucleic acid-binding proteins 449 600 IPR012340 -
Alju06g1123 1184 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Alju06g1123 1184 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 7 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju06g1123 1184 PANTHER DNA LIGASE 4 3 1178 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Alju06g1123 1184 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju06g1123 1184 ProSiteProfiles BRCT domain profile. 798 910 IPR001357 -
Alju06g1123 1184 Coils Coil 126 146 - -
Alju06g1123 1184 Gene3D - 445 605 IPR012340 -
Alju06g1123 1184 MobiDBLite consensus disorder prediction 610 634 - -
Alju06g1123 1184 Pfam DNA ligase N terminus 6 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju06g1123 1184 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Alju06g1123 1184 MobiDBLite consensus disorder prediction 1117 1172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1123 Alju-ChrAlju06 10821011 10833670 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1123 214 601 Core DNA Replication Machinery Family AT1G08130 27.295 1.50e-29 125