Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1107 ATGTGTTTGTCGTTATTATCAGAGACAGCGACGGAGGAGCAGAGAGAGACGACGACGACCATGACAGCGACAGAGGGACAAACTTCCAAGGTCAGAAGGACCAAGGTTGCGCCATGCTTGACGTGTCCTTTGTGTAATGATTTCTACAGAGAAGCCACCACTATTTCAGAATGCTTGCACACTTTTTGCAAGGAATGCATATGGAAGAAATTCAGAGATGAGTGTGAGACGCATTGTCCAGTATGTGATATAAACCTGGGTACTTATCCACTTGAGAGGACAAGGCCAGACCCTAATCTGCAAGATTTGAGGGATAAAATTTTCCCTCATGAGGAAAAAAGTGCTAAGGCACCTGAAAGTGTGCCTGTGCCTGCGCCTGAGCTTGTGCCTTCCTTTCCATTGCCATCCGATACCAAGAAAAAGGAGAGGTCTGTCTCTTCATTAGGCGCCAGTCCAAAAACTAAGCTATCAAGCCATTCTTCTTTAGTTGAAAGAAGGGCGAAAACTGCAGCGAAAAAATTTTTGGATGAACAAGAATCTGCTCTTGCTGCCATTGAATTGGAGAAAAGATCAGCTGGTAAGAAACACGGAAGACCGAATGGGGTAGTAATTTTGGAAGGCTCTGCTAAAAATTCATCAAGAACAAAGTCTGTAGCAAGGAAAAAATCCATTCCTCAAGAATATATCGCCTCTACTAGTCAACCTCAGCCTCAGAAAGTAGCCGGAGATAACAAGACAAACCAGGAACACAGTCCTATTCCAAAAGAATACATTCCCTCTGCTAGTCAATCTCAGCCTCAGAAAGCAGCAGGACATAACAAGACAGACAAGGAGCACAGTGAGCTAGAAATTGAGAATGTGACAAGTGAAATTGAGAATCAGAAGACTTCCTTAGAACCAGATTTGAACCAGCAAAAAGTGCCTAATGAAACTTCTGAGAAAAATGCTGTGTTATGGAAAGGAAAAGCTCTCATGTGGAAGCCCTTGAACTGCCTCATGGAAGCTGCAGAAAATGCAGAGTCTATAGAGTCCAACAATATGCAAGAAAATGCTAATTTTGCAGTGCCGGTTGAATCTTGCAACAATGACTCCAATACTACCAAAATTATGGCAGCCAGTGATCAAAATGAGGCAACCAAAATTATGGCAGCTAGTGATCAAAGTGAGGCAACCAAAATTATGGCAGCTAGTGATCAAAGTGAGGCAACTCCAGTTCAACCAGATCCCATCAAAACTATGGGTTTGAGGATCAAACATCAAAGAAGAGTCAAACTTTCTCAAGACTTGAATGTTCCTGCAGAACCTGTACCTACTGGTTCAAGCAGCCAAAGCAATGAAAGAATAATTCCAGTATGGTTCTCATTAGTTGCTTCTGAAGAGGGGGATGCACGTGCACGCTTGCCACAGATATCTTACCCCTACCTGAGGGTCAGGGATGTCAATTTACCTATTTCATTCATCAAGAAGTATATAGTGAAGAAGCTTGATCTTGCAAGCGAAGCAGAGGTGGAAATCTCATTAAGTGGGAAGCCGTTGTTGCCTTCACTGCAACTGAAGGACGTAGTAGAGATGTGGTTAAAGACAGTGCCAAAGTCTGATGAGATGATTCATTCCTTTGTTGGGGACTCAGCAAAGGATTTTATGATGGTTCTTTCGTATAGTCGAAAGGCTTTTTAG 1677 0.4287 MCLSLLSETATEEQRETTTTMTATEGQTSKVRRTKVAPCLTCPLCNDFYREATTISECLHTFCKECIWKKFRDECETHCPVCDINLGTYPLERTRPDPNLQDLRDKIFPHEEKSAKAPESVPVPAPELVPSFPLPSDTKKKERSVSSLGASPKTKLSSHSSLVERRAKTAAKKFLDEQESALAAIELEKRSAGKKHGRPNGVVILEGSAKNSSRTKSVARKKSIPQEYIASTSQPQPQKVAGDNKTNQEHSPIPKEYIPSASQSQPQKAAGHNKTDKEHSELEIENVTSEIENQKTSLEPDLNQQKVPNETSEKNAVLWKGKALMWKPLNCLMEAAENAESIESNNMQENANFAVPVESCNNDSNTTKIMAASDQNEATKIMAASDQSEATKIMAASDQSEATPVQPDPIKTMGLRIKHQRRVKLSQDLNVPAEPVPTGSSSQSNERIIPVWFSLVASEEGDARARLPQISYPYLRVRDVNLPISFIKKYIVKKLDLASEAEVEISLSGKPLLPSLQLKDVVEMWLKTVPKSDEMIHSFVGDSAKDFMMVLSYSRKAF 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1107 558 CDD RING-HC_PCGF 40 83 - -
Alju06g1107 558 MobiDBLite consensus disorder prediction 271 288 - -
Alju06g1107 558 SUPERFAMILY RING/U-box 38 92 - -
Alju06g1107 558 MobiDBLite consensus disorder prediction 1 29 - -
Alju06g1107 558 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Alju06g1107 558 MobiDBLite consensus disorder prediction 289 310 - -
Alju06g1107 558 Coils Coil 175 195 - -
Alju06g1107 558 MobiDBLite consensus disorder prediction 112 164 - -
Alju06g1107 558 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 214 556 IPR044807 GO:0004842
Alju06g1107 558 SMART ring_2 42 82 IPR001841 -
Alju06g1107 558 MobiDBLite consensus disorder prediction 226 270 - -
Alju06g1107 558 Pfam Zinc finger, C3HC4 type (RING finger) 42 82 - -
Alju06g1107 558 Gene3D - 434 536 - -
Alju06g1107 558 Coils Coil 332 352 - -
Alju06g1107 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 126 IPR013083 -
Alju06g1107 558 ProSiteProfiles Zinc finger RING-type profile. 42 83 IPR001841 -
Alju06g1107 558 MobiDBLite consensus disorder prediction 191 310 - -
Alju06g1107 558 Coils Coil 277 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1107 Alju-ChrAlju06 10635345 10639418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1107 29 173 C3H Transcription Factor Family AT2G30580 50.000 4.64e-36 135