Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1100 ATGTCGAGGCGCTCTCCGGACTATGACATGGATCCTACAACTAGTAATCCTGATCCCAAGTTGAGTTTTTGTAGGCGTAAGTCGGCGCCTGTTGGAGAAGGTGCAGGTTGCAAGAATTGCAAATGCAAGAAATCAATGTGTTTGAAGCTTTATTGCGAGTGTTTCACTTCGGGTGTATATTGTATGGAATCTTGCTCGTGTCAAAACTGCCACAACAACCCAACTCATAAAGACGCAGTGATTGCAGCTCGCAAGGCATCTGAGACTCGTAACCCTCTTGCATTTGCTCCTAAAGTCAACAGAAGCGCTGATTCTTCAACTGAAAATGGGGTTGACCCAAACAAAACTCAAGCTTCAACTGCACACATAAGAGGATGCAACTGCAAGAAATCCAAATGCCAAAAGAAATATTGTGAATGTTACGAGAATGGAGTTGGTTGCTCCATTAAATGTAGATGTACTGGATGCAATAACGTATATGGGAGAAATTCTTGTTATTCTGAATTAGGACCAGAAACTGGAACCCAAATAAATGAATCCTGTGAAACGCTTATGGCTGAAAAAGTTTCTCAGGTAACTGAAACTTTGAATAATGAAGGCCATCCAAATTCTACTGCTACTTCCCCAACACCTTCATCATGGGCTTACAGATCAAATGCTTCATTGGGTGGTTCATCAAAGAGAGAACGACCTAGCAATTTCATCATTCCAGATGCTTCTGGATTTAATGCAAGCCATCAAAGACTCAATGAGAGAAGTAATATTCTTCATAATCAATTGAATTTTGAAGATGATTTCAAAAGCAGTAATCCAGAATTGCAAATGCCAAATATTCACCAAGTTGGTGATGGCTCTTCTACCACATACATTAACTCTTGTTTCATCACTTACACCAACAATTCTTCTAATAGTGCCAGAGAGATGATTCATTATCATCCTAGCCCTCCATTTCCTTCTCCCAACTCTCTCCAACACCCTACACCTCATGCCAACCCTACCACACCAGGCAATTTCTTGCAACATTGGAAATAA 1032 0.407 MSRRSPDYDMDPTTSNPDPKLSFCRRKSAPVGEGAGCKNCKCKKSMCLKLYCECFTSGVYCMESCSCQNCHNNPTHKDAVIAARKASETRNPLAFAPKVNRSADSSTENGVDPNKTQASTAHIRGCNCKKSKCQKKYCECYENGVGCSIKCRCTGCNNVYGRNSCYSELGPETGTQINESCETLMAEKVSQVTETLNNEGHPNSTATSPTPSSWAYRSNASLGGSSKRERPSNFIIPDASGFNASHQRLNERSNILHNQLNFEDDFKSSNPELQMPNIHQVGDGSSTTYINSCFITYTNNSSNSAREMIHYHPSPPFPSPNSLQHPTPHANPTTPGNFLQHWK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1100 343 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 124 158 IPR005172 -
Alju06g1100 343 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 38 73 IPR005172 -
Alju06g1100 343 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 24 280 IPR044522 GO:0003700
Alju06g1100 343 MobiDBLite consensus disorder prediction 1 20 - -
Alju06g1100 343 MobiDBLite consensus disorder prediction 326 343 - -
Alju06g1100 343 SMART CXC_2 35 76 IPR033467 -
Alju06g1100 343 SMART CXC_2 121 162 IPR033467 -
Alju06g1100 343 MobiDBLite consensus disorder prediction 194 234 - -
Alju06g1100 343 MobiDBLite consensus disorder prediction 194 228 - -
Alju06g1100 343 MobiDBLite consensus disorder prediction 306 343 - -
Alju06g1100 343 ProSiteProfiles CRC domain profile. 36 161 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1100 Alju-ChrAlju06 10556828 10559250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1100 10 162 CPP Transcription Factor Family AT3G22760 62.987 1.64e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Alju06g1100 TCR 5.8e-11 No_clan