Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1073 ATGGCTGACGTCCAAAGCCCCTTTACACTCTCATCATCACCACCTCCTCCGCTGCCGTCTTCTTCCCCGAAATCCGGCATGACCATGCTGTACTACGGCCTGGCGGTGGTCGGCACGGCGGCCATATTGTTAGCCATGTACAACCTCATCATCATCAGGCGGTGCAGCCGCAGCCGCCGGCATGGGCAAGGGGCAGGGGACGACCGGGAAGTGGAGGTGGTGATCGGGGCGGCCGGAAGTAGTAGCCGGAGCTTTGAATGCTCAAATAGGAACCTGCTTTCAAGCTTCAGGTATAAGAAAGAAGTAGAAGAGAAAGAGGAATATGAATGCCCAGTTTGCTTATCAGTGTTTGAAGATGGTGAAGAAGTGAGGAAGCTACCTGGCTGTAATCATTCGTTTCATGTGATTTGTATAGACATGTGGCTTTATTCTCACTTGGATTGCCCTGTCTGTCGAACACCTGTTGGGTTAACAGAGTGA 480 0.5208 MADVQSPFTLSSSPPPPLPSSSPKSGMTMLYYGLAVVGTAAILLAMYNLIIIRRCSRSRRHGQGAGDDREVEVVIGAAGSSSRSFECSNRNLLSSFRYKKEVEEKEEYECPVCLSVFEDGEEVRKLPGCNHSFHVICIDMWLYSHLDCPVCRTPVGLTE 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1073 159 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 156 - -
Alju06g1073 159 SMART ring_2 110 151 IPR001841 -
Alju06g1073 159 CDD RING-H2_EL5-like 110 152 - -
Alju06g1073 159 MobiDBLite consensus disorder prediction 1 22 - -
Alju06g1073 159 SUPERFAMILY RING/U-box 99 156 - -
Alju06g1073 159 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Alju06g1073 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 157 IPR013083 -
Alju06g1073 159 FunFam RING-H2 finger protein ATL1 72 157 - -
Alju06g1073 159 Pfam Ring finger domain 109 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1073 Alju-ChrAlju06 10157001 10157480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1073 10 155 C3H Transcription Factor Family AT2G17450 34.416 2.37e-19 78.6