Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1065 ATGGGAAGGAAGCCTTGCTGTGATAAAGAAGGCGTAAATAGAGGAACTTGGTCTGTGATAGAAGATGGAATCCTTTCCAACTTCATTAAACTCCACGGTGAAGGAAAATGGAGGGACGTTCCTAAACGAGCAGGGTTGAATCGATGTGGCAAGAGTTGCAGACTTCGATGGTTGAACTACCTTAGGCCTGACATTAAGAGAGGAAACTTTTCTGAAGCTGAAGAAGACCTCATTATCAGACTCCATAACCTCCTTGGCAATAGGTGGTCACTAATCGCGGGACGATTACCAGGGCGAACAGATAATGAGATCAAGAATTTCTGGAACACGAATTTGAGCAAGAGGGCCCATCAAAATCATCCCCACAACAACAAACCCTCACATCCATTCACAACCAAATCTCCGACCACCTTAACATCTGCTCATCATCAACCTAGCCCTGTGATTCGAGCTAAACCAGTCAGATGCACCAAGAAAATCATCTTCCCCGAATCCAATGGTGGCATTAGTAGTGTACCTCGGGAAACCCAGAATAATAAGACTGCTTCAACATCCGACACAGCACGAGTAGATGATCTTATGATCAATGATTGTTTCTCTTCCTTTGGTGTTATTGAAGATTTTGACGTTGATGGCTTGCTCATACCGCAACAAGTGCCTGAAATTAATATTGATGATGAGGAAGCGAATGAATTAGAAGGGTGTGATGAGGATGAAGCCAATAATCCAACCCACCAGAATTGGTTGGTAGGGCAATTATTTGAATCAACAGAACATAATGATGACGTGGACTTCTCTTTTCTAAATCTACAAAGTAACTCAATCATGGACTTAGATCCATCCTGTTTGGATGGTAGGGCTTAG 864 0.4294 MGRKPCCDKEGVNRGTWSVIEDGILSNFIKLHGEGKWRDVPKRAGLNRCGKSCRLRWLNYLRPDIKRGNFSEAEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNFWNTNLSKRAHQNHPHNNKPSHPFTTKSPTTLTSAHHQPSPVIRAKPVRCTKKIIFPESNGGISSVPRETQNNKTASTSDTARVDDLMINDCFSSFGVIEDFDVDGLLIPQQVPEINIDDEEANELEGCDEDEANNPTHQNWLVGQLFESTEHNDDVDFSFLNLQSNSIMDLDPSCLDGRA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1065 287 CDD SANT 69 112 IPR001005 -
Alju06g1065 287 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Alju06g1065 287 CDD SANT 16 61 IPR001005 -
Alju06g1065 287 MobiDBLite consensus disorder prediction 115 144 - -
Alju06g1065 287 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju06g1065 287 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 181 - -
Alju06g1065 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Alju06g1065 287 Gene3D - 69 137 - -
Alju06g1065 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Alju06g1065 287 SMART sant 66 114 IPR001005 -
Alju06g1065 287 SMART sant 13 63 IPR001005 -
Alju06g1065 287 MobiDBLite consensus disorder prediction 115 147 - -
Alju06g1065 287 Gene3D - 14 66 - -
Alju06g1065 287 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju06g1065 287 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju06g1065 287 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Alju06g1065 287 Coils Coil 286 287 - -
Alju06g1065 287 FunFam Transcription factor RAX3 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1065 Alju-ChrAlju06 10060876 10063653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1065 1 134 MYB Transcription Factor Family AT1G06180 64.925 7.82e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju06g1065 Myb_DNA-binding 2.3e-12 CL0123