Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1040 ATGCCGTATTCATCCTTACGGGTCTTAATAAAGGCTATGGGCCAATTTGGGCTTAAGTGCAGTAAATGTAATTCAGTATATCCGGCCACATACGACCACCGCCTTCCCCTCTCGGCCTGTCTGTACAAAACCACTCGTCATCGGAAAGTCATGGCTGGCGTAGCACCCGATAATTCGCAATTTGACGCTCGTCAATATGATTCAAAATTGGAACAGCTTACGAATGACGGGCAGGACTTCTTTACATCTTATGATGAGGTTCATGATAGTTTTGATGCCATGGGTTTGCAAGAGAATCTTCTCAGAGGCATTTATGCATATGGATTTGAGAAGCCCTCCGCTATACAGCAAAGGGGAATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAGCAGGCTCAGTCTGGAACTGGAAAGACTGCAACTTTCTGCTCTGGGGTTTTGCAGCAGCTTGACTATAGTTTGATGGAATGCCAGGCCTTGGTATTAGCACCAACTCGAGAACTTGCCCAGCAGATTGAGAAGGTTATGCGAGCACTTGGAGACTATCTTGGTGTGAAGGTGCATGCATGTGTGGGAGGAACTAGTGTTCGTGAAGACCAACGCATTCTATCTAGTGGTGTTCATGTCGTTGTTGGTACCCCTGGTCGTGTATTTGACATGCTGCGCAGGCAGTCACTTCGGCCAGATTACATCAAGATGTTTGTCTTGGATGAGGCAGATGAAATGCTTTCGCGAGGTTTTAAAGATCAGATCTATGATATATTCCAGCTGCTTCCATCCCGGATTCAGGTGGGAGTTTTTTCAGCCACAATGCCTCCTGAGGCTCTCGAGATCACCAGGAAGTTTATGAACAAACCTGTTAGAATTCTTGTGAAGCGTGATGAGCTAACCTTGGAAGGCATAAAACAGTTTCATGTCAATATTGAGAGAGAGGATTGGAAGCTAGACACACTCTGTGATCTTTATGAAACTTTGGCTATCACTCAGAGTGTCATTTTTGTGAACACCAGAAGGAAGGTTGATTGGCTTACTGACCAGATGCGAAGCCGGGACCACACAGTTTCAGCAACCCATGGAGACATGGACCAGAATACCAGAGATATTATTATGCGTGAATTCCGTTCTGGGTCGTCTCGTGTTTTAATAACAACTGATCTTTTGGCTCGTGGTATTGATGTCCAGCAAGTGTCACTAGTTATTAATTATGATCTTCCTACCCAGCCTGAGAACTATCTCCATCGTATTGGCCGTAGTGGGAGGTTTGGCAGGAAGGGTGTCGCAATCAACTTTGTGACCAGGGATGATGAAAGAATGCTGTTTGACATCCAGAGATTTTATAATGTGGTAATTGAGGAGCTGCCATCTAATGTTGCTGAACTCCTATAA 1389 0.4507 MPYSSLRVLIKAMGQFGLKCSKCNSVYPATYDHRLPLSACLYKTTRHRKVMAGVAPDNSQFDARQYDSKLEQLTNDGQDFFTSYDEVHDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLMECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSRIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNIEREDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPSNVAELL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1040 462 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 236 244 IPR000629 -
Alju06g1040 462 Gene3D - 79 297 IPR027417 -
Alju06g1040 462 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 290 IPR014001 -
Alju06g1040 462 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 301 462 IPR001650 -
Alju06g1040 462 PANTHER RNA HELICASE 70 446 - -
Alju06g1040 462 FunFam Eukaryotic initiation factor 4A-III 297 462 - -
Alju06g1040 462 FunFam Eukaryotic initiation factor 4A-II 77 296 - -
Alju06g1040 462 Pfam DEAD/DEAH box helicase 114 275 IPR011545 GO:0003676|GO:0005524
Alju06g1040 462 Gene3D - 298 462 IPR027417 -
Alju06g1040 462 CDD SF2_C_DEAD 302 432 - -
Alju06g1040 462 SMART helicmild6 342 423 IPR001650 -
Alju06g1040 462 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 89 117 IPR014014 GO:0003724
Alju06g1040 462 SMART ultradead3 108 305 IPR014001 -
Alju06g1040 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 443 IPR027417 -
Alju06g1040 462 CDD DEADc_EIF4A 93 291 - -
Alju06g1040 462 Pfam Helicase conserved C-terminal domain 315 423 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1040 Alju-ChrAlju06 9795752 9798739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1040 51 462 Eukaryotic Initiation Factors Gene Family AT1G72730 87.440 0.0 752