Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1033 ATGGACAGCGTCTTCTCCTTCTCAGAAGCCGAAAGAGTTGATTTCCTCCAATCCATACTCAACACTTATGGCTGCGCTTATATCTGCCTCTGGTTCTACTGTCCCTCTTCCAACCGGCTTCTCTTCTTGGATGGTTTGTGCGACGCCGCACCAAACTCTCTGAGTGTTTTTGACCAATATAGGGGTTTGGAATTTGATGTCACTTCTGACAATGATGGCGTCCCAGGACTAGCTTTTCGGAACCACCAGTACACCTGCCTAGAGCTCCAACAATCCGATCTCTTAAGACTAGCATGCACTCATACCCAAAGACGTTTCTTTCAGGAAGCAAGGATTAAGACAGCTGTTTTCATAGGTTGCGGCAATGGGGAAATTGAGCTTGGTTTCTCAGTTATCTCTCAAGGTGCTGAGATTCATCAAACAGATGATGTGATGAAGAACTTGTTTGCAGAAGAATATTCTAGACGGTCCCATGTAGCTCAACTGAAGAATCCATCTTCATGTTCTTTGAGATCAATAATATCCACAGCGAGCAGTCCCGAATCCACATCCCTCGGGTCCGGTAATATTCCGCCGGCGGCCACTTGGCTCTCGCCTGAAATGCTGCTGCTGCAAGAGAAAGAACGCGAAGCAATAGTTAAAGCAATTATTCATGTTATATCCTCGCCTTCTTCTTCTAATAATGATTCAGCCTTTATTCATCAGCAAATTCCGCCTATTACACATCCAGAAGCAGGAACTAGTGCTTTTACCAGTTACAGACCTAATTCAGAAATGATAAGTTCCAAATTACCCAGTTTGATGAGCAGGAAGCAGCAACAAAGCTTGCTCAAGAGATCATTCGAATTGTTGGGAGGCTTACATTACATGAGAAATATGAGAGAGAGTTATCAAGCTGGTCGTCCCACTAGTGCCCAGCTCCTTCATGTGATCTCAGAACGAAGAAGACGTGAGAAGCTCAATCAGAACTTTCAGGCACTTAGGTCACTACTCCCTCCTGGAACCAAGAAAGACAAGGGTTCAATACTTACAGCAGCAAAGGAGACATTGCACTCATTGATGGCTGAGATTGAAAAGATGACCAAAGGAGATCAGAAAATGAAAGCCAGTGAATTATTACTATTAACAGATCAAGAAACGAAAACCATTAGTACCTCCACTACTGAAAGATTGAGTGTGAGAGTCTCAGATGTGGGAGGGTCGAGCTCATCAGAGGAAAGATTCATTGACCTGCAAGTGACTGTGAGAGGACGAAGCTATAATTCTCATGAAGAGATATTGATTCGCTTATTGGAATTCTTGAAAGGAGTTCAGGGAGTGAGCTTGGTTTCTGTGGACTCTAACACAACACATATAGCACAACAAGGAGCCGCCATTAATGAAGCAACTTTAACGCTCAAGATAGAGGGGAGCGAATGGGATGAGGCTACCTTCAGTGAAGCTGTGAGAAGGGTGGTTGCTGACCTGGCAGAGTGA 1476 0.4438 MDSVFSFSEAERVDFLQSILNTYGCAYICLWFYCPSSNRLLFLDGLCDAAPNSLSVFDQYRGLEFDVTSDNDGVPGLAFRNHQYTCLELQQSDLLRLACTHTQRRFFQEARIKTAVFIGCGNGEIELGFSVISQGAEIHQTDDVMKNLFAEEYSRRSHVAQLKNPSSCSLRSIISTASSPESTSLGSGNIPPAATWLSPEMLLLQEKEREAIVKAIIHVISSPSSSNNDSAFIHQQIPPITHPEAGTSAFTSYRPNSEMISSKLPSLMSRKQQQSLLKRSFELLGGLHYMRNMRESYQAGRPTSAQLLHVISERRRREKLNQNFQALRSLLPPGTKKDKGSILTAAKETLHSLMAEIEKMTKGDQKMKASELLLLTDQETKTISTSTTERLSVRVSDVGGSSSSEERFIDLQVTVRGRSYNSHEEILIRLLEFLKGVQGVSLVSVDSNTTHIAQQGAAINEATLTLKIEGSEWDEATFSEAVRRVVADLAE 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1033 491 Pfam Helix-loop-helix DNA-binding domain 309 353 IPR011598 GO:0046983
Alju06g1033 491 Gene3D - 305 373 IPR036638 GO:0046983
Alju06g1033 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 353 IPR011598 GO:0046983
Alju06g1033 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 368 IPR036638 GO:0046983
Alju06g1033 491 CDD bHLH_AtbHLH_like 309 360 IPR045239 -
Alju06g1033 491 SMART finulus 310 359 IPR011598 GO:0046983
Alju06g1033 491 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 102 488 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1033 Alju-ChrAlju06 9728838 9733647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1033 1 490 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 34.120 1.05e-72 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju06g1033 HLH 4.1e-10 No_clan