Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1005 ATGACGGAAAGTTTCTTCTGGCGACTCGCAAGTGTAGACGTGTCACCTGCACAGATTATATCATCTCTCTTGATGCTGATGATATGTCAAAGGGAAGCAACACTTTTATGTTGGGAAACTGAGCCACCTCACAAAGAGGCAAAGATTACAAAAAGCCGATCCGTTAAACACGGGAATCTAAATCAAGTTTCACCCAAGGTTTCTGCTGGTAACTATCCAGGGGCACGCATCTTATATGTGCTAGGCTCCAGGTCAAAATCAAACAGAATTGAAAACTCTGTATCTAGATCCCCGGGCAGTGATAAGGTGCTAGTGTTAAAAAGTAAGCCTCCAAGGTGGTTTGAGCAGTGCCAACGATGGTGCTTGTACTTCAAAGGAAGAGTGACAGTTGCTTTAGTTAATAACTTTCAGCTGGTGGCTTCCCCAGCAAAAGGACCTTCAGGTGAAGAACATGAGAAGATCATCCTCCAATTTGGGAAAGTAGGGAAGGATCTGCTTACCATGGATTACCAGTACCCCATCTCAGCATTTCAGGCTTTTGCAATATGCCTCAGCAGCTTTGAAACCAAAATTCTTTAG 579 0.4387 MTESFFWRLASVDVSPAQIISSLLMLMICQREATLLCWETEPPHKEAKITKSRSVKHGNLNQVSPKVSAGNYPGARILYVLGSRSKSNRIENSVSRSPGSDKVLVLKSKPPRWFEQCQRWCLYFKGRVTVALVNNFQLVASPAKGPSGEEHEKIILQFGKVGKDLLTMDYQYPISAFQAFAICLSSFETKIL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1005 192 Gene3D Tubby Protein; Chain A 40 192 IPR025659 -
Alju06g1005 192 PRINTS Tubby superfamily signature 172 192 IPR000007 -
Alju06g1005 192 PRINTS Tubby superfamily signature 124 140 IPR000007 -
Alju06g1005 192 PRINTS Tubby superfamily signature 151 170 IPR000007 -
Alju06g1005 192 PRINTS Tubby superfamily signature 106 123 IPR000007 -
Alju06g1005 192 Pfam Tub family 89 189 IPR000007 -
Alju06g1005 192 SUPERFAMILY Tubby C-terminal domain-like 51 191 IPR025659 -
Alju06g1005 192 PANTHER TUBBY-RELATED 81 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1005 Alju-ChrAlju06 9420396 9421306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1005 38 191 TUB Transcription Factor Family AT2G47900 44.118 3.34e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Alju06g1005 Tub 5.7e-41 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g1005 06 9420396 9421306 Alju06g1005 06 9420396 9421306 ECH