Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju06g0998 | ATGCCACCATCATCACCTTATACAAGGATTATCCTCATCTTGACACTCCATTCCATTCGTTGCCTTACCCTCTCTTCTGAGAGAGAAGGCAGAGAGCTTTATGCCCGTTCCTCTCTTTCAAAATCCATGGAAGGCTATGACATTGAACGTCTTGGTTTTGGGAAGATGGGATATGGGTGCAAGCATTATAGGAGAAGATGCAAGATTCGGGCCCCTTGCTGCAACGAACTGTACTCCTGCCGTCATTGTCATAACGAGGCAACGAGCATGTTCAAGAACCCCTTTGATCGACACGAAATGGTTCGTCAAGATGTGAAACAAGTTGTTTGTTCAGTTTGTGATACAGAGCAGCCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAATACATGCAAATTCTTCGATGATGATACGGAGAAACAGCAGTTTCATTGTGATGATTGTGGAATCTGCAGAATTGGTGGTCGTGATAATTTTTTCCACTGCAACAAGTGCGGGTCTTGCTATTCACTTGGTCTGCTTGATAATCATTTATGCGTAGAGGACTCCATGAGGCATCACTGTCCTATATGTTACGAGTACCTTTTTGATTCAGTGAAGGACACTACCGTTATGAAATGTGGTCACACAATGCATTATGAATGTTTCCAAGAGATGATAAAACGTGAAAAGTATTGTTGCCCCATATGCTCCAAGTCAGCAATTGACATGTCCGTGATGTGGAAGATGATTGATGAAGAGATTGAAGCAACTCTCATGCCTGAAGATTATCGGCACAAGAAGGTTTGGATACTGTGTAATGACTGCAATGACACAACGGAAGTATACTTCCACATAGTAGGGCAAAAATGTGGGCACTGCAGATCCTACAACACTCGTGAAATTGCTCCCCCTGTTCTTCCTCAGTGA | 930 | 0.4323 | MPPSSPYTRIILILTLHSIRCLTLSSEREGRELYARSSLSKSMEGYDIERLGFGKMGYGCKHYRRRCKIRAPCCNELYSCRHCHNEATSMFKNPFDRHEMVRQDVKQVVCSVCDTEQPVAQVCTNCGVKMGEYFCNTCKFFDDDTEKQQFHCDDCGICRIGGRDNFFHCNKCGSCYSLGLLDNHLCVEDSMRHHCPICYEYLFDSVKDTTVMKCGHTMHYECFQEMIKREKYCCPICSKSAIDMSVMWKMIDEEIEATLMPEDYRHKKVWILCNDCNDTTEVYFHIVGQKCGHCRSYNTREIAPPVLPQ | 309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju06g0998 | 309 | SMART | ring_2 | 195 | 237 | IPR001841 | - | |
| Alju06g0998 | 309 | SUPERFAMILY | RING/U-box | 194 | 246 | - | - | |
| Alju06g0998 | 309 | Gene3D | - | 269 | 304 | - | - | |
| Alju06g0998 | 309 | SUPERFAMILY | CHY zinc finger-like | 58 | 129 | IPR037274 | GO:0008270 | |
| Alju06g0998 | 309 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 46 | 306 | - | - | |
| Alju06g0998 | 309 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 130 | 194 | IPR017921 | - | |
| Alju06g0998 | 309 | SUPERFAMILY | Zinc hairpin stack | 131 | 188 | IPR037275 | - | |
| Alju06g0998 | 309 | ProSiteProfiles | Zinc finger RING-type profile. | 195 | 238 | IPR001841 | - | |
| Alju06g0998 | 309 | Pfam | CHY zinc finger | 60 | 140 | IPR008913 | GO:0008270 | |
| Alju06g0998 | 309 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 184 | 268 | IPR013083 | - | |
| Alju06g0998 | 309 | FunFam | RING finger and CHY zinc finger domain-containing protein 1 | 266 | 307 | - | - | |
| Alju06g0998 | 309 | Pfam | Zinc-ribbon | 242 | 300 | IPR039512 | - | |
| Alju06g0998 | 309 | Pfam | Ring finger domain | 194 | 237 | IPR001841 | - | |
| Alju06g0998 | 309 | ProSiteProfiles | Zinc finger CHY-type profile. | 53 | 128 | IPR008913 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju06g0998 | Alju-ChrAlju06 | 9371152 | 9374787 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju06g0998 | 28 | 308 | C2H2 Transcription Factor Family | AT3G18290 | 39.189 | 5.84e-58 | 199 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Alju06g0998 | 06 | 9371152 | 9374787 | Alju06g0998 | 06 | 9371152 | 9374787 | ECH |