Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0995 ATGGCTCGCCCTTCGAAGCCTCAGGATTCTTCCGACGACCAGCTGTCGAACGGTTCGAGTTCGTCGGAGGAGGAGCATGTCAACGATCAGATCAACGATGAGGAGGACGAAGAGGAGCTACAAGCGGTGGCTCGCTCTGCCAGCTCTGATGATGAAGATGCTGCCGATGACAATTCCCTCGATTCCGATGGAGAGGCGCCCTTTGGAGATGATGACGAGGAGGAACAGGTTGAAGGCATTGTCGACCCTGAAATTGCTAGGCGGGAAAAGGCCAGACTGTATGAAATGCAGAGGCTGAAGAAACAAAAGATTCAGGAGATGCTGGATGCGCAAAATGCTGCCATTGATGCGGACATGAACAACAAAGGGAAGGGGCGCTTGAAGTATCTTCTACAGCAAACTGAACTGTTTGCTCATTTTGCAAAAGGCGATCAATCATCTCAAAAGAAGTCCAAAGGAAGGGGTCGGCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAGTATCTTAAAGAAGAAGAAGATGGATTAGCAGGAAACACACGATTGGTGATGCAACCATCATGTATTCAAGGAAAGTTGAGGGATTACCAACTTGCTGGCCTAAACTGGCTTATACGATTGTATGAGAATGGTATAAATGGAATTCTGGCAGATGAGATGGGGCTTGGTAAAACACTACAAACTATCTCCTTATTGGGCTATTTGCACGAGTTTAGAGGAATAACTGGTCCTCACATGGTCGTTGCTCCAAAATCCACACTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTCTTGCGGCCAATAAAGTTCCTTGGCAATCCTGATGAAAGGAGGCATATTAGAGAGGAATTATTAGTTGCTGGGAAGTTTGATGTGTGTGTTACCAGTTTTGAAATGGCCATCAAGGAGAAGTCTGCTTTGCGTCGTTTTAGTTGGCGTTACATAATTATAGATGAAGCCCATCGGATCAAGAATGAGAATTCCCTCCTTTCAAAGACAATGAGGCTCTATAATACAAATTATCGCCTCCTTATCACTGGTACACCACTCCAGAATAATCTTCATGAACTTTGGGCTCTTCTCAATTTTCTTCTTCCAGAAATATTTGGTTCTTCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGAAAATGATCAGCAGGAGGTTGTTCAACAGCTGCACAAGGTCCTACGACCATTTCTCCTTCGAAGGTTGAAATCGGATGTTGAAAAAGGTTTGCCACCCAAAAAGGAAACCATTCTTAAAGTAGGCATGTCACAAATGCAGAAGCAGTATTATAGGGCTTTGCTGCAGAAGGATCTTGAGGTTGTTAATGCTGGTGGGGAACGGAAACGTCTCCTGAATATAGCCATGCAACTACGTAAATGTTGTAATCATCCATATCTTTTTCAAGGTGCTGAACCTGGTCCACCCTATACGACAGGGGACCATCTTATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTGCTTCCTAAATTAAAAGAGCGTGACTCTAGGGTCCTTATATTTTCACAGATGACTAGACTGCTAGACATACTTGAAGATTATCTGATGTATCGTGGCTATCAGTATTGTCGTATTGATGGTAATACTGGTGGAGAAGATCGTGATACTTCCATTGAGATTTTTAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGGGCTGGAGGCCTTGGCATTAATCTTGCCACGGCTGATGTTGTCATCCTGTATGACAGTGATTGGAACCCACAAGTTGACTTGCAGGCTCAGGACCGTGCTCATAGGATTGGCCAAAAGAAAGAAGTTCAAGTTTTCCGATTCTGCACTGAGTACACAATTGAGGAGAAGGTCATTGAAAGGGCTTACAAAAAGCTAGCCCTTGATGCGCTTGTGATTCAGCAAGGACGATTAGCAGAGCAGAAGACTGTAAATAAGGATGAGTTACTTCAGATGGTCAGATTTGGTGCTGAAATGGTTTTCAGTTCTAAGGATAGTACAATTACCGATGAAGATATTGACAGGATTATTGCTAAAGGAGAGGAAGCAACAGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGACGCTATAAAATTTAAGATGGATGACACTGCCGAGTTGTATGATTTTGATGATGAAAAGGATGAGAATAAAGTTGATTTCAAAAAAATTGTAAGTGATAACTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGCAACTACTCAGAGTCTGAATATTTTAAGCAAACATTGCGCCAAGGTGGCCCTACGAAGCCAAAAGAGCCCCGTATTCCTAGGATGCCACAGCTGCATGATTTCCAGTTTTTCAACACTCAAAGGCTGAGCGAGCTGTATGAAAAGGAAGTACGCTATCTTATGCAAGCACATCAGAAGAATCAGGTAAAAGACTCCATAGATGTTGACGAACCAGAAGAGGTGGGAGATCCCTTAACTGCTGAAGAACTGGAAGAAAAGGAGCGCTTACTGGAGGAGGGATTTTCTTCATGGAGCCGAAGGGATTTCAATACTTTCATTAGAGCCTGTGAAAAGTATGGGCGGAATGATATAAAGAGTATTGCTTCTGAGATGGAAGGAAAATCAGAGGAGGAAGTTGAACGATATGCAAAGGTTTTCAAAGAAAGATACAAGGAGTTAAATGATTATGATAGAATTATTAAAAATATTGAAAGAGGGGAGGCTAGAATTTCTAGAAAGGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGATCGATACAAGAATCCATGGCTAGAATTGAAGATACAATATGGTCAAAACAAAGGGAAGTTATACAATGAAGAATGTGATAGGTTCATGATATGCATGGTCCACAAACTTGGCTATGGGAATTGGGATGAGTTGAAGGCGGCATTTCGAACATCACCTTTATTTCGATTTGATTGGTTTGTCAAGTCTCGCACAACACAGGAACTTGCTAGGAGATGTGACACCCTCATTAGGTTGGTAGAGAAGGAAAATCAAGAATATGATGAGAGAGAACGACAAGCTCGTAAAGAGAAGAAACTTGCCAAGAGCATGACCCCATCAAAACGAGGCTCAGCTAGACAGACGGATGGTTCAACATCAATAAAGAAGCGCAGGCAGTTAACTATAGATGACTATGGAAAGAGGAGAAAATAA 3204 0.4223 MARPSKPQDSSDDQLSNGSSSSEEEHVNDQINDEEDEEELQAVARSASSDDEDAADDNSLDSDGEAPFGDDDEEEQVEGIVDPEIARREKARLYEMQRLKKQKIQEMLDAQNAAIDADMNNKGKGRLKYLLQQTELFAHFAKGDQSSQKKSKGRGRHASKVTEEEEDEEYLKEEEDGLAGNTRLVMQPSCIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRPIKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFGSSETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDTSIEIFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKVDFKKIVSDNWIEPPKRERKRNYSESEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQAHQKNQVKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKSEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRGSARQTDGSTSIKKRRQLTIDDYGKRRK 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0995 1067 Gene3D ISWI, HAND domain 747 845 IPR036306 GO:0003677|GO:0006338|GO:0031491
Alju06g0995 1067 MobiDBLite consensus disorder prediction 53 79 - -
Alju06g0995 1067 Gene3D - 846 900 - -
Alju06g0995 1067 MobiDBLite consensus disorder prediction 1017 1067 - -
Alju06g0995 1067 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 100 1055 - -
Alju06g0995 1067 Pfam SLIDE 903 1013 IPR015195 GO:0003677|GO:0005634|GO:0006338
Alju06g0995 1067 Gene3D iswi atpase 901 933 - -
Alju06g0995 1067 SMART sant 846 895 IPR001005 -
Alju06g0995 1067 SMART sant 948 1009 IPR001005 -
Alju06g0995 1067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 500 651 IPR001650 -
Alju06g0995 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 747 845 - -
Alju06g0995 1067 Coils Coil 1003 1030 - -
Alju06g0995 1067 MobiDBLite consensus disorder prediction 142 174 - -
Alju06g0995 1067 MobiDBLite consensus disorder prediction 1 87 - -
Alju06g0995 1067 CDD SF2_C_SNF 496 621 - -
Alju06g0995 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 207 372 IPR014001 -
Alju06g0995 1067 Gene3D - 934 1037 - -
Alju06g0995 1067 CDD DEXHc_SMARCA1_SMARCA5 192 412 IPR044754 GO:0005524
Alju06g0995 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 846 900 - -
Alju06g0995 1067 Gene3D - 196 411 IPR038718 -
Alju06g0995 1067 SMART helicmild6 526 610 IPR001650 -
Alju06g0995 1067 Pfam Helicase conserved C-terminal domain 498 610 IPR001650 -
Alju06g0995 1067 Gene3D - 416 708 IPR027417 -
Alju06g0995 1067 MobiDBLite consensus disorder prediction 1048 1067 - -
Alju06g0995 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 416 708 - -
Alju06g0995 1067 Pfam SNF2-related domain 208 475 IPR000330 GO:0005524|GO:0140658
Alju06g0995 1067 SUPERFAMILY Homeodomain-like 849 899 IPR009057 -
Alju06g0995 1067 SMART ultradead3 191 383 IPR014001 -
Alju06g0995 1067 CDD SANT 849 893 IPR001005 -
Alju06g0995 1067 SUPERFAMILY Homeodomain-like 901 1023 IPR009057 -
Alju06g0995 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 934 1037 - -
Alju06g0995 1067 MobiDBLite consensus disorder prediction 1017 1034 - -
Alju06g0995 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 410 IPR027417 -
Alju06g0995 1067 MobiDBLite consensus disorder prediction 145 165 - -
Alju06g0995 1067 ProSiteProfiles SANT domain profile. 845 897 IPR017884 -
Alju06g0995 1067 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 758 848 IPR036306 GO:0003677|GO:0006338|GO:0031491
Alju06g0995 1067 FunFam Chromatin-remodeling complex ATPase 196 411 - -
Alju06g0995 1067 Pfam HAND 759 841 IPR015194 GO:0003677|GO:0006338|GO:0031491
Alju06g0995 1067 MobiDBLite consensus disorder prediction 7 25 - -
Alju06g0995 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 693 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0995 Alju-ChrAlju06 9340121 9348200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0995 187 637 RAD5 or RAD16-like Gene Family AT1G02670 26.355 7.95e-41 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju06g0995 SNF2_N 3.8e-71 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g0995 06 9340121 9348200 Alju06g0995 06 9340121 9348200 ECH