LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju06g0985	ATGCCAAGTTCTAGAGCCTCATCAGAGAAGAAAACCCAGATGGGTTTGCTTCTTCAAACCAATCCATCTTCTTTTGGTGATCAGAGAAGAGGAAGAAGAAAGCAAGGAGAAGCAGGGAGGTTTCTGGGAGTAAGAAGAAGACCTTGGGGAAGATATGCTGCAGAAATTAGAGACCCCACAACTAAAGAAAGACACTGGCTTGGCACTTTTGATACTGCTCAAGAAGCTGCTTTAGCTTATGACAGAGCTGCTTTGTCCATTAAAGGAAGCCAAGCAAGAACCAACTTTGTTTACACTGACATTAATACAACCTTTGGCAATACTCTTGTTTGTCCCTTTGATGATGTTCATCAGCTTCAGTCACTCTTTAACACTCCTCAGATGAAACAGTCAACAACCAATCAGAACAGCCCACCTCAGCTTTCTGAGATTACTACTACTGCTGTTGCTGCATGTGATCATTCTTCTTCTTCTTCTTCTTCAGCTCAGGAGGGTGGTGATAATAACTTGTTCTTCTTCTCCAATGATGATTCTAAATCAGGTTACTTGGAATGCATAGTTCCTGATATCTGTTTTAGACCTTCTTCTTCTTATTCCAATGATACCAACAATGCCTTAATTCCCTGTGCTGATGAAACAAGTGACCAAAAGATAACTCAAGAAGCTGTGAAGAACATGGCTTCATCAAGCTCTGGAGATTTCACTTACCCAAATTATGAACTTGGTCAAGAAACAATCTGGGATTGGCGCTGCACTGAACTTGCTGCTATATTTAACAGTCCATTAAAGGTTGAAGATACAGACAGTTCTATCTGTGGGATATTGTCTCAACCTGCTGCTACTTCATCAACCAATTATGTTCAATCACTTCCTTCATTTGATGTTGATTTCTCATACACACTCTTCTGA	909	0.4048	MPSSRASSEKKTQMGLLLQTNPSSFGDQRRGRRKQGEAGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSIKGSQARTNFVYTDINTTFGNTLVCPFDDVHQLQSLFNTPQMKQSTTNQNSPPQLSEITTTAVAACDHSSSSSSSAQEGGDNNLFFFSNDDSKSGYLECIVPDICFRPSSSYSNDTNNALIPCADETSDQKITQEAVKNMASSSSGDFTYPNYELGQETIWDWRCTELAAIFNSPLKVEDTDSSICGILSQPAATSSTNYVQSLPSFDVDFSYTLF	302

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju06g0985	302	ProSiteProfiles	AP2/ERF domain profile.	40	97	IPR001471	GO:0003700\|GO:0006355
	Alju06g0985	302	Pfam	AP2 domain	43	89	IPR001471	GO:0003700\|GO:0006355
	Alju06g0985	302	MobiDBLite	consensus disorder prediction	1	26	-	-
	Alju06g0985	302	FunFam	Ethylene-responsive transcription factor 2	40	98	-	-
	Alju06g0985	302	MobiDBLite	consensus disorder prediction	1	39	-	-
	Alju06g0985	302	SMART	rav1_2	40	103	IPR001471	GO:0003700\|GO:0006355
	Alju06g0985	302	PRINTS	Ethylene responsive element binding protein signature	41	52	IPR001471	GO:0003700\|GO:0006355
	Alju06g0985	302	PRINTS	Ethylene responsive element binding protein signature	63	79	IPR001471	GO:0003700\|GO:0006355
	Alju06g0985	302	Gene3D	AP2/ERF domain	40	98	IPR036955	GO:0003700\|GO:0006355
	Alju06g0985	302	CDD	AP2	40	96	IPR001471	GO:0003700\|GO:0006355
	Alju06g0985	302	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	21	227	-	-
	Alju06g0985	302	SUPERFAMILY	DNA-binding domain	41	97	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju06g0985	Alju-ChrAlju06	9241006	9241914	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju06g0985	11	205	AP2-EREBP Transcription Factor Family	AT5G18560	43.568	2.93e-50	168

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju06g0985		AP2	3.3e-12	CL0081