Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0984 ATGGAGCGGTACGGCCGGGCAAGCGACGAGGCGCAGTCCGATCCGGCACCGGAATGGACTGGAACCGGAGGCGAAACGGGGCTTGAAGAATCTATGCGGCAATTGGGATTGGCTGGTGGGGAATCGTATCCACAACGGCCCGATGAGGCTGATTGCATGTACTATTTGAGGACTGGGTTTTGCGGATATGGCTCGCGGTGTCGGTTCCATCATCCCCGTGACCGTGGCGCGGTTATAGGAGCTTCGAGGACTGGCGTGGAGTATCCAGAGCGAGTAGGCCAGCCTTTATGTCAGTATTTTATGAGGACAGGATCTTGCAAATTTGGTGCTTCATGTAAGTACCACCATCCTAGGCAGGGAGGAGGCGTTGCTCCTGTGCCACTTAATTATTATGGATATCCATTACGACCGGATGAGAAAGAGTGTTCGCATTATGTGGAAACAGGACAATGCAAGTTTGGCACATCTTGTAAGTTTCACCACCCACAGCCTGCCGGTGTTCAAGTTCCTGCCCCATTACTAGTTCCCCATGCTTCAACTCTACCTGTACGAGTACCTTCACCATTCTATCCAACTATGCAGCCTCCATCTGGTTCTTCATCACAACAATATGGTGTAATGTTTGCAAGATCACCTCTACTACCGGGGTCATTAGTGCAAAATCCTTACGGGCCTGTGGTAATGTCCCCTGTCCCTTTTTCAGGTTGGAATCCTTATCAGGCTACTACAAGCCCTGCAGTCCCTTCTAGTACTCCATCTAATGTTGGCTCAACACAATTTTATGGGAATACCCAGCTACCTTCACTAGCACCTGCCTATTATGCACCATATCAACCTACAGGTTCCTCATTTGGTCCCTCAAGCACCAGTCCAGGAGAACAACATTCATTTCCAGAAAGACCTGGTCAACCAGAATGTCAGCATTACATGAGAACAGGGGAGTGTAGATTTGGTCCTTCCTGTAGATACCATCATCCACCTGAATTGATTGCACCAAATGTAAATGTGGTCCTTAGTCCTGTGGGTCTTCCTATGCGCCCGGGGGCACCACCTTGCATTCATTATGCACAGCGGGGAGTATGTAAGTTTGGTCCTGCATGCAAGTTTGATCATCCTATGGGAGCATTGACTTACAGTCCATCTGCATCTTCCCTTAATATGCCAGTTGTATCCGTTCCTGCGGGCTTGTCCATCAGTACTCTTGCACCATCGTCTTCATCATCAGAGTTGCGGCCTGAACTTAGCCCTGGTTCAAGCGAGGAGCATGGATCGTTCAGAATGTCTTCTTCAATGAGCACATCCACTGGACCAGTTGGCTTAGCTTCATCATCTGGCGGAACCGTTTCTCAGTCAGATGCTCAAACATGCACGCAAAGTTCTGCTCCGGCAGTGACTCCCATGATCACAACAGGCAGCGCGCTCTCTCATACCCCAAGCTAA 1440 0.4986 MERYGRASDEAQSDPAPEWTGTGGETGLEESMRQLGLAGGESYPQRPDEADCMYYLRTGFCGYGSRCRFHHPRDRGAVIGASRTGVEYPERVGQPLCQYFMRTGSCKFGASCKYHHPRQGGGVAPVPLNYYGYPLRPDEKECSHYVETGQCKFGTSCKFHHPQPAGVQVPAPLLVPHASTLPVRVPSPFYPTMQPPSGSSSQQYGVMFARSPLLPGSLVQNPYGPVVMSPVPFSGWNPYQATTSPAVPSSTPSNVGSTQFYGNTQLPSLAPAYYAPYQPTGSSFGPSSTSPGEQHSFPERPGQPECQHYMRTGECRFGPSCRYHHPPELIAPNVNVVLSPVGLPMRPGAPPCIHYAQRGVCKFGPACKFDHPMGALTYSPSASSLNMPVVSVPAGLSISTLAPSSSSSELRPELSPGSSEEHGSFRMSSSMSTSTGPVGLASSSGGTVSQSDAQTCTQSSAPAVTPMITTGSALSHTPS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0984 479 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Alju06g0984 479 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Alju06g0984 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 163 IPR000571 GO:0046872
Alju06g0984 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
Alju06g0984 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Alju06g0984 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Alju06g0984 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 349 373 IPR000571 GO:0046872
Alju06g0984 479 Gene3D - 292 375 - -
Alju06g0984 479 PANTHER PROTEIN PHOSPHATASE RELATED 29 403 - -
Alju06g0984 479 SUPERFAMILY CCCH zinc finger 137 164 IPR036855 GO:0046872
Alju06g0984 479 ProSiteProfiles Zinc finger C3H1-type profile. 346 374 IPR000571 GO:0046872
Alju06g0984 479 Gene3D - 124 171 - -
Alju06g0984 479 MobiDBLite consensus disorder prediction 400 414 - -
Alju06g0984 479 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Alju06g0984 479 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Alju06g0984 479 SMART c3hfinal6 346 373 IPR000571 GO:0046872
Alju06g0984 479 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Alju06g0984 479 SMART c3hfinal6 138 163 IPR000571 GO:0046872
Alju06g0984 479 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Alju06g0984 479 MobiDBLite consensus disorder prediction 421 479 - -
Alju06g0984 479 MobiDBLite consensus disorder prediction 281 305 - -
Alju06g0984 479 MobiDBLite consensus disorder prediction 1 31 - -
Alju06g0984 479 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Alju06g0984 479 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Alju06g0984 479 MobiDBLite consensus disorder prediction 400 479 - -
Alju06g0984 479 SUPERFAMILY CCCH zinc finger 304 328 IPR036855 GO:0046872
Alju06g0984 479 SUPERFAMILY CCCH zinc finger 92 119 IPR036855 GO:0046872
Alju06g0984 479 MobiDBLite consensus disorder prediction 281 296 - -
Alju06g0984 479 Gene3D - 42 120 - -
Alju06g0984 479 SUPERFAMILY CCCH zinc finger 349 376 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0984 Alju-ChrAlju06 9220534 9225427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0984 1 420 C2H2 Transcription Factor Family AT5G18550 54.005 4.83e-145 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju06g0984 zf-CCCH 2.2e-08 CL0537