Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0881 ATGAATCTGAGCAACAACGTCAAGGGATCCATGTCAACGGCCAGTTCTACTTCCGCTCGGAAATCCGGCTGTGACGGCGCCAGTGCCGTCGACCAGTTCCCGGCCGGGTTGCGGGTACTGGTGGTCGACGATGATCCTACTTGCCTTATGATCCTTGAGAAGATGCTTCGTACTTGTCTCTACGAAGTAACAAAATGCAATAGAGCTGAAGTTGCATTGTCTCTTCTGAGAGAGAACAAAAACGGGTTCGACATAGTTATAAGCGATGTGCATATGCCAGACATGGATGGCTTTAAGCTTTTAGAGCACATAGGGCTGGAGATGGACCTTCCAGTTATTATGATGTCGGCAGATGATAGTAAAAATGTTGTTATGAAAGGTGTAACACATGGTGCTTGTGATTACCTAATAAAACCTGTTCGTATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAAAAGAAGAATGAGTGGAAGGATTTGGAGCAGTCGTATAATAGCACAGAAGAAGGAGATCGGCAGCAAAAGGCGTCAGATGAAGCCGATTACTCGTCCTCGGCAAATGAAGGAAGCTGGAGAAATGCTAAGAAGAAGAGAGATGAGGAGGAAGATGCAGAGGACAAGGATGATACTTCCCCATTAAAGAAGCCACGTGTCGTTTGGTCTGTTGAGCTCCACCAACAGTTTGTGGCTGCCGTGAATCAACTGGGAATTGACAAGGCTGTTCCCAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACCAGAGAAAATGTTGCTAGCCATCTCCAGAAATACCGTCTATATCTAAGAAGACTCAGTGGTGTTTCTCAGCACCAGAGTAACATGAACAACTCTTTCATCAGTCCACAAGAAGCAACCTTTGGGACAATGTCTGCATTTAATGGAATCGATCTTCAAGCTCTTGCAGCTGCTGGCCAGCTTCCAGCACAGAGTCTGGCGGCACTTCAGGCGGCAGGACTCGGTAGATCAACTGCTAAAGTTGGGGTATCTGTGCCACTCATTGATGAAAGGAACCTGTTCAGTTTTGAAAACCCCAGATTAAGATATGTAGATGGGCAACAGCAGCACTTGAGAAGTACTAAACCGACAAACTTGCTTCATGGAATCCCTACCAACATGGAGCCAAGGCAGCTCGCCAATTTGCACCAATCGACACAATCCCTCGGTGGAATGAACGTTAGAGTCAATGCATCTAGTGTGCAAAGCAACTCTTTATTGATGCCAACGTCTCAATCTCAACCAAGAGGTCAGATGCTCAACGAAAATACGGCTTCGCATGTTCCAAGACTTCCATTATCTGTCGGGCAGCCTACTGTACCGAATGGAATTTCTAATGCAGCTCTGGGAAGAAATGCGATTGCTGGTAATAACAGAGGAGCTGCTTATAATCCAATTCCACAAACTACTACTTCGCTGACAAGTTTCCCCGCGAACCAAGCTACAGAAATGTCTGCTAGCCGTTTCCCGCTTGGAAGCACACCAGGCATATCTAGTATCCCTGCGAAAGGCACGTTTCAAGAGGAAGATACCTCAGGAATCAAGGGACCTGGAGGATTTGTTCCAAGTTATGATATTTTCGATGAACTGCACCAGCAAAAGTCCCATGATTGGGGACAAAATGTGGGCCTCACATCATACGATACCTCACAGCGTGTAAATTTACACGGTAACATTGATGTCTTGCCATCGGTTATTGTACATCAGAGCTTTTCTTCGCCCACCCAACAGACTGGACAGAATAGAGATTCTGCTCTGATCGGAAAAGCCGTGTACTCCCAAGTGAAAGGTTTGGAACAAGGAAACCTCCATCAACTTGTTGAAAATCCTGCAAGGGTCAAGACTGAAATAATTTCTGATGTAAACTCTAATTCTAACTTCTTCCCTGAGCTTTATGGGCAGGATGATCTCATGAGTGCCCTTCTGAAACAGCAAGAAGCCATTGGAGCAGCTGAGAATGAATTTGACTTTGATGGATATTCATTGGACAACATTCCGGTTTAA 2034 0.4548 MNLSNNVKGSMSTASSTSARKSGCDGASAVDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEVALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDSKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDLEQSYNSTEEGDRQQKASDEADYSSSANEGSWRNAKKKRDEEEDAEDKDDTSPLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNMNNSFISPQEATFGTMSAFNGIDLQALAAAGQLPAQSLAALQAAGLGRSTAKVGVSVPLIDERNLFSFENPRLRYVDGQQQHLRSTKPTNLLHGIPTNMEPRQLANLHQSTQSLGGMNVRVNASSVQSNSLLMPTSQSQPRGQMLNENTASHVPRLPLSVGQPTVPNGISNAALGRNAIAGNNRGAAYNPIPQTTTSLTSFPANQATEMSASRFPLGSTPGISSIPAKGTFQEEDTSGIKGPGGFVPSYDIFDELHQQKSHDWGQNVGLTSYDTSQRVNLHGNIDVLPSVIVHQSFSSPTQQTGQNRDSALIGKAVYSQVKGLEQGNLHQLVENPARVKTEIISDVNSNSNFFPELYGQDDLMSALLKQQEAIGAAENEFDFDGYSLDNIPV 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0881 677 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 217 274 IPR017930 -
Alju06g0881 677 Gene3D - 37 174 - -
Alju06g0881 677 ProSiteProfiles Response regulatory domain profile. 38 153 IPR001789 GO:0000160
Alju06g0881 677 MobiDBLite consensus disorder prediction 1 22 - -
Alju06g0881 677 MobiDBLite consensus disorder prediction 194 215 - -
Alju06g0881 677 Gene3D - 216 277 - -
Alju06g0881 677 MobiDBLite consensus disorder prediction 165 215 - -
Alju06g0881 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 327 IPR045279 GO:0009736
Alju06g0881 677 PIRSF RR_ARR_type-B 10 669 IPR017053 GO:0003677|GO:0003700|GO:0009736
Alju06g0881 677 CDD REC_typeB_ARR-like 39 153 - -
Alju06g0881 677 MobiDBLite consensus disorder prediction 165 181 - -
Alju06g0881 677 Pfam Myb-like DNA-binding domain 220 270 IPR001005 -
Alju06g0881 677 FunFam Two-component response regulator 214 277 - -
Alju06g0881 677 NCBIfam myb-like DNA-binding domain, SHAQKYF class 218 271 IPR006447 GO:0003677
Alju06g0881 677 SUPERFAMILY CheY-like 36 160 IPR011006 -
Alju06g0881 677 FunFam Two-component response regulator 37 174 - -
Alju06g0881 677 SMART REC_2 37 149 IPR001789 GO:0000160
Alju06g0881 677 SUPERFAMILY Homeodomain-like 216 275 IPR009057 -
Alju06g0881 677 Pfam Response regulator receiver domain 39 147 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0881 Alju-ChrAlju06 8104490 8107456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0881 71 677 Response Regulator Gene Family AT3G16857 49.617 5.92e-176 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Alju06g0881 Response_reg 3.9e-23 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g0881 06 8104490 8107456 Alju06g0881 06 8104490 8107456 ECH