LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju06g0873	ATGTCAAAAGGAACTAGTCTGGTGCTGGACTCATCTGAAAATGGCACAGATTTATCTCAGGATGATATTGGCACCATTGAGGAAACCCCAGAGGAGTCAATTTTGTCACGACAGACTTCTGTGAACCTTGTTCCTTTTATTGGTCAAAGATTTGTTTCTCAAGAAGCTGCTTATGAATTTTACTGCAGTTTTGCAAAACAATGTGGCTTTTCAATTAGACGACATCGCACTCGAGGAAAGGATGGGATTGGTCGGGGAGTTACTAGAAGAGATTTTACTTGCCATCGTGGTGGTTATCCCCAGATTAAGCCATCTGATGATGGAAAGATGCAAAGGAATCGCAAGTCTTCTCGTTGCGGCTGTCAAGCATACATGCGTATTGTCAAAAGGGCAGATTTTGATGTCCCTGAATGGCGAGTGACAGGCTTTAGCAACATCCATAATCATGAGTTATTAAAATCCAATGAGGTGCGTCTTCTTCCAGCATACTGTACAATATCTCCAGATGACAAGAGCCGTATATGTATGTTCGCTAAAGCTGGAATGTCAGTGAGGCAAATGTTAAGATTGATGGAGCTTGAGAAAGGCATCAAACTTGGTTGTTTGCCTTTCACAGAGATTGACGTGAGAAACCTGTTGCAGTCATTTAGAAATGTTGATAGAGACAATGATGCTATTGATCTTATTGCTATGTGCAAGAGATTGAAAGATGAAAATCATAACTTCAAGTATGAGTTTAAGATTGATAGTAATAACAGGCTAGAGCATATTGCCTGGTCTTATGCCTCATCTATTCAACTGTATGAGCCATTTGGAGATGCTGTGGTTTTTGATACAACACACCGTCTGGATGCCTATGACATGTTGTTGGGAATTTGGCTTGGAGTGGACAATCATGGAATGACTTGTTTCTTTGGTTGCGCACTTCTGCGGGATGAAAATATTCAGTCCTTTTCATGGGCTCTAAAGGCATTCTTAAGCTTTATGGAAGGAAAGGCTCCACAAACCATGTTAACTGATCATAACATGTGGCTGAAAGAAGCCATTGCTGCTGAAATGCCTGAAACCAAGCATGCCTTTTGCATATGGCACATTATTGCCAAGTTCTCTGACTGGTTCTCTGTACTTCTTGGATCACATTATGATGAGTGGAAAGCCGAGTTCCATCGGCTCTACAATTTGGAACTGGTGGAAGATTTTGAGGAAGTATGGGGGCTAATGGTTGATAAATATGGACTCCATGCAAATAAGCACATTGTTAGCCTATACTCATTAAGGACATTTTGGGCTTTACCATTCTTGAGGTGCTACTTCTTTGCGGGATTGACCAGCACAAGTCAATCCGAGTCCATTAACGCTTTCATCCAACGGTTCTTGGGTGCCCAATCTCAACTGGATCGCTTTGTAGAGCATGTTGCTGACATTGTTGAATTTAATGACCGGGCTGGATCAAAGCAAAAGATGCAACGCAAACTGCAGAAAGTGTGCCTTAAAACTGGTTCACCTATCGAATCCCATGCTGCCACAATACTTACTCCATATGCCTTTAATAAACTGCAGGATGAGCTAGTTTTGGCGCCACAATATGCATCATTTCTGGTTGATGAAGGTTGCTTTCAGGTCAGACACCACACTCAGATGGATGGAGGATTCAAAGTATTTTGGGTTCCCTGCCAAGAACACATGAGCTGCAGCTGCCGTCTGTTCGAGTTTTCAGGCATCTTGTGCAGACATATATTAAGAGTTATGTCAAATAACAACTGTTTTCACATTCCTGACCAATATGTACCTGCCCGTTGGCGTAGTACCTGTCCATCTTCTGCTAACCCCTTCCGGGGTACAACTTCCAGGGATCATTCTGAAAGAATACCATTTTTGGAATCCATGGCTTCAACGCTTGTCATGGAATCCATTGAAACAGAGGAACGCCTCAGTGCTGCCTGTGAGCAAATGTCGGTGGTTTTATCGCGTATCAAAACCCTTCCTAGGTCAACACACGGGGTGAACAATATTGCATATAATTATCAATCAGATTCATTGATTCTGCCGGAGGTGGATGATGCTGATGGTATAATTCATGGTTTCACAATTGTAAATCCCCATGAGTCTATCAATTTAGGGAAACTAAAGGAGAGAAGGGCTAGAGATGGAGTTGATATAAGTAGGAAGCGAAGACATATTTCAGGGCCACTGTGTGGGCAATATGAACATGATGCACCTGATTGCTCCACTATGGCCGGTGATAATTTGAATGGAGATGCACTAGGGTACTCGTAG	2277	0.4247	MSKGTSLVLDSSENGTDLSQDDIGTIEETPEESILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGIGRGVTRRDFTCHRGGYPQIKPSDDGKMQRNRKSSRCGCQAYMRIVKRADFDVPEWRVTGFSNIHNHELLKSNEVRLLPAYCTISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDRDNDAIDLIAMCKRLKDENHNFKYEFKIDSNNRLEHIAWSYASSIQLYEPFGDAVVFDTTHRLDAYDMLLGIWLGVDNHGMTCFFGCALLRDENIQSFSWALKAFLSFMEGKAPQTMLTDHNMWLKEAIAAEMPETKHAFCIWHIIAKFSDWFSVLLGSHYDEWKAEFHRLYNLELVEDFEEVWGLMVDKYGLHANKHIVSLYSLRTFWALPFLRCYFFAGLTSTSQSESINAFIQRFLGAQSQLDRFVEHVADIVEFNDRAGSKQKMQRKLQKVCLKTGSPIESHAATILTPYAFNKLQDELVLAPQYASFLVDEGCFQVRHHTQMDGGFKVFWVPCQEHMSCSCRLFEFSGILCRHILRVMSNNNCFHIPDQYVPARWRSTCPSSANPFRGTTSRDHSERIPFLESMASTLVMESIETEERLSAACEQMSVVLSRIKTLPRSTHGVNNIAYNYQSDSLILPEVDDADGIIHGFTIVNPHESINLGKLKERRARDGVDISRKRRHISGPLCGQYEHDAPDCSTMAGDNLNGDALGYS	758

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju06g0873	758	Pfam	FAR1 DNA-binding domain	59	152	IPR004330	-
	Alju06g0873	758	Pfam	SWIM zinc finger	563	584	IPR007527	GO:0008270
	Alju06g0873	758	SMART	26again6	562	589	IPR006564	GO:0008270
	Alju06g0873	758	MobiDBLite	consensus disorder prediction	1	34	-	-
	Alju06g0873	758	MobiDBLite	consensus disorder prediction	1	23	-	-
	Alju06g0873	758	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	39	663	IPR031052	GO:0006355
	Alju06g0873	758	ProSiteProfiles	Zinc finger SWIM-type profile.	554	587	IPR007527	GO:0008270
	Alju06g0873	758	Pfam	MULE transposase domain	275	367	IPR018289	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju06g0873	Alju-ChrAlju06	8069672	8072415	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Alju06g0873		MULE	5e-21	CL0219