Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0870 ATGTCCACACTTGTTGAAGATACAATACTCAGATCCAAGAAAGTATCAACAGGAAGAGCTCCTTGCTGTGACAAGGTTGGTCTCAAAAAAGGACGGTGGACTTCCGAGGAAGACAAAATCTTGACCGACTATATTCAACTTCACGGCGAAGGCTCCTGGAGATCCTTGCCCAAAAATGCAGGGTTATTGAGGTGTGGGAAGAGCTGCAGACTGAGATGGATAAACTATTTGAGAGAAGACGTCAAAAGAGGCAACATTACTCCTCAAGAAGAGGCCATGATTGTGAAGCTTCATGGTGCCATCGGTAATAGGTGGTCTGTAATAGCGAGGCATCTACCAGGAAGAACAGATAATGAGATAAAGAATTATTGGAACTCTCATTTGCGAAGAAAAATTTACTGCTTCATGAAACCCTCAACCTCCGACTACGACACTCTCCCACCGATCGACATTGCTGCTCTGAACGCAGCTGCTTCTTCCAAACGAGGAAGATCAGGTGGTCGAGGCAAACCAACTCAAGCTCCCATACCAGAGGAGGACAAGAACAATAACAACACTTCAAATCAATATTCGCACTCAGATATGAATGCCCATGACCTGTTTGACAAAATGCATCAAAGAAAAGAAAACCCAGATGAAGCTGAGGCAATTTCAATTATGGGTTCTAGATCCTGGAGCCAGAATCATCACCAAGAAGAGACCTTTGATGGAATTGGTTTGGATGCATATTGTGAGATGAGTAGTGATGATACAAATGGCAAAGCAGGATTTTGCACCAATATGGATGGAGAAGGTGAGGCCTTGGGGCCATTTGAATGGCCAGATGATGAAGTAATGAAACTTAATTACATGTTTGAAAGTGGGATGCTTGTGAACCCAACCAGTAGTGGAAATAACAGTATGGAAAGAGAATATGGCTATGGGATGAATCTTCCAACAAGCGAGGACAGTAAAAGTGGTGTTTGGAGCTCAGAATTAAATTACATAGAGAGTGGGGAGTGGCATAACAACAACAACAATAATAATAGTAGCAGTTCATCATCAGGGAACTCTGTTTATGATTATCAGTGGGCTGATTGGGATATTTCAGCAAGTGCCCAATCCCATAATCAATGGAACTTGCAGTACTCTGAAGAAAGCCAGATGATGGCTTGTTTGTGGGATGCCACTGCAAATGGTGAAGTAAATAACTTCCACTGA 1200 0.4275 MSTLVEDTILRSKKVSTGRAPCCDKVGLKKGRWTSEEDKILTDYIQLHGEGSWRSLPKNAGLLRCGKSCRLRWINYLREDVKRGNITPQEEAMIVKLHGAIGNRWSVIARHLPGRTDNEIKNYWNSHLRRKIYCFMKPSTSDYDTLPPIDIAALNAAASSKRGRSGGRGKPTQAPIPEEDKNNNNTSNQYSHSDMNAHDLFDKMHQRKENPDEAEAISIMGSRSWSQNHHQEETFDGIGLDAYCEMSSDDTNGKAGFCTNMDGEGEALGPFEWPDDEVMKLNYMFESGMLVNPTSSGNNSMEREYGYGMNLPTSEDSKSGVWSSELNYIESGEWHNNNNNNNSSSSSSGNSVYDYQWADWDISASAQSHNQWNLQYSEESQMMACLWDATANGEVNNFH 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0870 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 77 IPR017930 -
Alju06g0870 399 MobiDBLite consensus disorder prediction 158 194 - -
Alju06g0870 399 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Alju06g0870 399 CDD SANT 32 77 IPR001005 -
Alju06g0870 399 Gene3D - 87 132 - -
Alju06g0870 399 CDD SANT 87 128 IPR001005 -
Alju06g0870 399 SMART sant 29 79 IPR001005 -
Alju06g0870 399 SMART sant 82 130 IPR001005 -
Alju06g0870 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
Alju06g0870 399 FunFam Myb transcription factor 27 108 - -
Alju06g0870 399 MobiDBLite consensus disorder prediction 177 194 - -
Alju06g0870 399 Pfam Myb-like DNA-binding domain 30 77 IPR001005 -
Alju06g0870 399 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Alju06g0870 399 SUPERFAMILY Homeodomain-like 27 124 IPR009057 -
Alju06g0870 399 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 18 228 - -
Alju06g0870 399 Gene3D - 27 83 - -
Alju06g0870 399 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0870 Alju-ChrAlju06 8037827 8042783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0870 18 281 MYB Transcription Factor Family AT5G49330 47.348 9.30e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju06g0870 Myb_DNA-binding 1.6e-13 CL0123