Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0751 ATGAAAAAACAAGGCTGGGTAAAGACTCTCCCTCTCTGTTTGGGTTCAACTCTGCTCTCGTCATTAAGCGTGAAATACATATTATACATGGCAACAGCTGAGGCAGCTCCTGCTGCTCTTGGTCCCCGATACGCACCTGATGACCCCACTCTTCCAAAACCTTGGAAGGGTTTGATTGATGGAAGTACGGGTCTATTATACTATTGGAACCCTGAAACCAACATCACCCAGTATGAAAAGCCTACAGCCCTGCCGCCACCCTTGCCTGCTGGACCACCTCAGTCAGTTTCTGCACCCAAGTTGGCTCCCATACCAGCGGCTCATTCAGGGCAACCTGGTGTGGTGGTGTCACAGCATGGGCAGCAGTTACTACAAACCTCTCACCAACAGGGACAGCAAATGAGCCACCTACCCCAACAGCATAGTCCCCAGGTACCACAGGTCGCTCAGCAGCAGCCTTCTCAAGCAGCACAAGTTGGACAACAACAGAGTTCACAGCCACTGCAGTCTATGCCACAACCAAGTTTGCAACAAGTCAGGCAGCAGCAGATGTTGCAGCCTCTGAGCCAGCAAATTCCACCACAGCAAATGCATCATCAGATGCCACAACAAGCCGTCCAGCCACAACCTTTTGGGCAAGGAGTCACCCAGGATCATGGTTCATATATGGGACAGCCACAAGCCCATCAATTCAGTCACCAGAACCTACATTACATGCCATATTCACAAAGCATGCACTCAAATGGGCAGCAAACTTCCCAACCAATCCTGCATAACATGCATGGTCAGCCATTGGAAAATCAACATGAGTTTAAAGCAGCATTCCCAAAGATAGAGGATGTAGATTTTAAAAACGGAAGTCAAGTTGGACTTTCACCATCCCAGTATCAGCAAAAGAGTGCCTTGCATCTGCAAAGCAATCAGAATACTCCTGCTGGAATTTCCTCTGTCCAGATGCCACGTGTTGGTGCTAATGCTGGCCAAGCACAACCATTCAGTGCTATGTCTGGTGGTATGCAGCAACCTTCTGCAGCAATGCAATCGCAGCAGGGTAGTGCTGATTTAGTTTATCAACACGGTCATAACTTTCAAAACCAGATGGGCCTAGGAATGATGCATGGTCAGCCATCTAATGTCCATCCTGTTGACCCAAAGATGGGACATGAGGATAACTTGCGTGGTAGAGCTGTGAATGAATATTACTACAACTCGGGCAAGGAGATGCCAACAATGGGTTCTCAGCAGCCAAGTATTGCACCAGTACCCATTTCAAGAAATCAGCAGGCTTATCAGCAGGATATGAGAATTGGCAGTTCCCCTTTTCAAAATGCAATGCCTGGTGGGAATGGGTTAAATGGCATCCCAGGGCATAGCATGCATAACATGTTTAATCCTCCGATTGGAGGCCCTCCACCTGTTGCTGGTAACTCTTTGGCAAGGCCTCATGTCCCTGATCTGTCACCTGCTGAAATTTACCGTCAACAACATGAAGTTACAGCTACGGGCGACAATGTCCCTCCCCCCTTTATGACATTTGATGCTGCTGGGTTTCCTCCAGAGATTTTGAGAGAGATCTATTCTGCGGGCTTCTCAACTCCAACACCTATTCAAGCTCAAACATGGCCTGTTGCCCTACAGGGTAGGGACATAGTGGCTATTGCCAAAACAGGCTCTGGAAAAACATTGGGTTATTTAATACCAGCATTTATGATTCTTAGACAGAGGCGTAACAATCCCCTGAATGGTCCTACGGTGTTGGTATTGGCTCCAACACGTGAACTTGCAACACAGATTCAAGATGAAGCCATAAAATTTGGCCGATCTTCACGGTTCTCCTGCACGTGCTTGTATGGTGGGGCACCAAAAGCTCATCAGTTAAAAGAGTTAGACCGCGGAGCAGACATTGTTGTTGCTACACCTGGCCGTCTCAATGACATACTTGAAATGAAGAAAATCGACTTTGCGCAAGTCTCACTTCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATACCGCCACGTAGGCAAACTCTTATGTACACAGCAACATGGCCAAAAGAAGTACGAAAAATTGCCGGTGATCTCCTAGTTGATCCTGTCCAAGTTAATATTGGAAATGTTGATGAGCTTGCTGCAAATAAAGCGATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAAAGGCGTTTAGAGCAGATCATCAGGGCCCAAGAACGAGGTTCTAAGGTTATAATATTTTGTTCCACAAAGAGGTTATGTGATCAACTTACCCGAAACATTGGCCGTAATTTTGGTGCTGCTGCAATCCATGGAGACAAGTCTCAAGGTGAAAGAGACTGGGTTTTGAATCAGTTTAGGACCGGGAAGTCACCAATTCTTGTTGCCACTGATGTTGCTGCCCGGGGGCTTGACATTAAGGATATAAGGGTTGTGATCAACTATGATTTCCCTACTGGAATTGAGGACTATGTACATCGTATTGGTCGAACAGGGAGGGCTGGAGCCACTGGATTGTCATACACCTTTATCTCTGAGCAGGACTGGAAACATGCAGGTGACCTGATTAAAGTTTTGGAAGGTGCTAACCAGCTTGTGCCTCCGGAGTTGCGACAGATGGCTTTGCGTGGACCATCAAACTTTGGAAAGGATCGGGGTGGAATGAGCCGTTTTGATTCTGGTGGTGGCCGTTGGGAGTCCGGGGGCCGTGGTGGCATGAGAGATGGTGGCTTTGGTGGTCGTGGTGGCATGAGAGACGGTGGCTTTGGCGGCCGTGGTGGCATGAGGGATGGTGGTGGGTTTGGTGGTCGTGGTGGGATGAGGGATGGTCCAGGTGTGCAAGGTGGAAGAGGTGATTTCTTTCCTGGTAGGGGGGGCAACAGGGGTCGGGGAATGGGTGGCCCTCGTGGTGGTCATGTTGGCTGGGGTAGGGGTGAACGTGACTCCTATGATCGTTTCAACATGGATGGGCGAGGGCGTGGGCGTGGTGGACGTGGACGTGGACGTTTTGACAACAGAAGAGATGTTGGTTACAGGAGCGGAGGCAGAAGTTACAGTCGCAGCCCCGAAAGGGTTCGAACATGGGATTATAGCAGAAGCCGCAGTAGAAGCAGAAGCAGAAGTCAAAGCAGGAGTAGGAGCTGGAGTAGGGGCCGCAGTCGAAGTCGCAGCTGGTCTCATGGCCGGAGTCGCAGTTATAGCCGTAGCATCAGCCGGAGTCGGAGTCCCAGTCGCAGCTATGGCCGCAGGAGTCGAAGTTACAGCCGCAGCCATAGTAGAAGCCACAGCAGTGATAGACACGATAGGCCAGATCAACATATTTCTGATCAGAACGAGCATAGAGCACAAGAAGCAGAATCCTCTGAACCAAAGACATTCTCTATGTCTCCCAGGTCCCAGGGGAAGTCACTTCAAGGAACTGAACACGTGGAGCCGCCACCAGTTGTTAGTAATGCTGAGACAGTGAATTCAGGTGCTGTAGTAGAAGACCCTTGCCTTCAATCAGTTCTTGATGTCTAG 3561 0.4917 MKKQGWVKTLPLCLGSTLLSSLSVKYILYMATAEAAPAALGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTALPPPLPAGPPQSVSAPKLAPIPAAHSGQPGVVVSQHGQQLLQTSHQQGQQMSHLPQQHSPQVPQVAQQQPSQAAQVGQQQSSQPLQSMPQPSLQQVRQQQMLQPLSQQIPPQQMHHQMPQQAVQPQPFGQGVTQDHGSYMGQPQAHQFSHQNLHYMPYSQSMHSNGQQTSQPILHNMHGQPLENQHEFKAAFPKIEDVDFKNGSQVGLSPSQYQQKSALHLQSNQNTPAGISSVQMPRVGANAGQAQPFSAMSGGMQQPSAAMQSQQGSADLVYQHGHNFQNQMGLGMMHGQPSNVHPVDPKMGHEDNLRGRAVNEYYYNSGKEMPTMGSQQPSIAPVPISRNQQAYQQDMRIGSSPFQNAMPGGNGLNGIPGHSMHNMFNPPIGGPPPVAGNSLARPHVPDLSPAEIYRQQHEVTATGDNVPPPFMTFDAAGFPPEILREIYSAGFSTPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFMILRQRRNNPLNGPTVLVLAPTRELATQIQDEAIKFGRSSRFSCTCLYGGAPKAHQLKELDRGADIVVATPGRLNDILEMKKIDFAQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVDPVQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQIIRAQERGSKVIIFCSTKRLCDQLTRNIGRNFGAAAIHGDKSQGERDWVLNQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGLSYTFISEQDWKHAGDLIKVLEGANQLVPPELRQMALRGPSNFGKDRGGMSRFDSGGGRWESGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDGGGFGGRGGMRDGPGVQGGRGDFFPGRGGNRGRGMGGPRGGHVGWGRGERDSYDRFNMDGRGRGRGGRGRGRFDNRRDVGYRSGGRSYSRSPERVRTWDYSRSRSRSRSRSQSRSRSWSRGRSRSRSWSHGRSRSYSRSISRSRSPSRSYGRRSRSYSRSHSRSHSSDRHDRPDQHISDQNEHRAQEAESSEPKTFSMSPRSQGKSLQGTEHVEPPPVVSNAETVNSGAVVEDPCLQSVLDV 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0751 1186 FunFam probable ATP-dependent RNA helicase DDX17 479 718 - -
Alju06g0751 1186 MobiDBLite consensus disorder prediction 82 99 - -
Alju06g0751 1186 Pfam Helicase conserved C-terminal domain 741 849 IPR001650 -
Alju06g0751 1186 Gene3D - 45 83 - -
Alju06g0751 1186 MobiDBLite consensus disorder prediction 1135 1153 - -
Alju06g0751 1186 MobiDBLite consensus disorder prediction 1036 1050 - -
Alju06g0751 1186 MobiDBLite consensus disorder prediction 1105 1134 - -
Alju06g0751 1186 SMART ultradead3 529 732 IPR014001 -
Alju06g0751 1186 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 744 888 IPR001650 -
Alju06g0751 1186 ProSiteProfiles WW/rsp5/WWP domain profile. 49 83 IPR001202 GO:0005515
Alju06g0751 1186 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 485 888 - -
Alju06g0751 1186 SMART helicmild6 765 849 IPR001650 -
Alju06g0751 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 581 864 IPR027417 -
Alju06g0751 1186 Gene3D - 720 890 IPR027417 -
Alju06g0751 1186 MobiDBLite consensus disorder prediction 988 1027 - -
Alju06g0751 1186 MobiDBLite consensus disorder prediction 889 1175 - -
Alju06g0751 1186 FunFam ATP-dependent RNA helicase RhlB 719 891 - -
Alju06g0751 1186 CDD SF2_C_DEAD 729 858 - -
Alju06g0751 1186 ProSitePatterns WW/rsp5/WWP domain signature. 55 81 IPR001202 GO:0005515
Alju06g0751 1186 MobiDBLite consensus disorder prediction 114 226 - -
Alju06g0751 1186 SMART ww_5 50 83 IPR001202 GO:0005515
Alju06g0751 1186 Pfam WW domain 51 81 IPR001202 GO:0005515
Alju06g0751 1186 MobiDBLite consensus disorder prediction 1076 1097 - -
Alju06g0751 1186 Pfam DEAD/DEAH box helicase 534 704 IPR011545 GO:0003676|GO:0005524
Alju06g0751 1186 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 661 669 IPR000629 -
Alju06g0751 1186 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 541 715 IPR014001 -
Alju06g0751 1186 Gene3D - 486 719 IPR027417 -
Alju06g0751 1186 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 510 538 IPR014014 GO:0003724
Alju06g0751 1186 MobiDBLite consensus disorder prediction 78 226 - -
Alju06g0751 1186 MobiDBLite consensus disorder prediction 1051 1075 - -
Alju06g0751 1186 SUPERFAMILY WW domain 43 83 IPR036020 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0751 Alju-ChrAlju06 6784500 6792065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0751 498 887 Eukaryotic Initiation Factors Gene Family AT3G19760 32.737 2.35e-65 225