Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0720 ATGGAACTATCATCTATGGAACTGGACGACTGGGACCTGAGCGCAGAGGATCTTGATTCTCTCGAAAAAGACGCTTTCCAAAAGATTGCTCAACTACGCAACTCCTCTTGCTCTGCGTCTGTTTCTTCTTCCAACACTCAACAATTCAATGTACATCAACAACAATCTGCAAAACCTTGGGGCAACGACTTGGAACGATCCCCTGCAAAACCCATTTCTGATTGTCGTCATGAAAGAGTTGAAGCTTTGTCTCCGCAGTCTAGAGCGTTACCCTCGTCATTAAAATCAGGAACAAACAACGATGATCATTCAAAAGAAATGCCAAAGGTTTCTGTCAAACTGTTTCTTCATTCCAGCGGAGACGTTGCAGCAAAGTTTCAATATAACCAGACAGTAATATCTGCTATAAGGAGAGTCCCCAAATCTACTTGGAACGCAAAAGAAAGGTTATGGATGTTCCCACTATCTTCCTTGTCAGCAGCAGAAAAGGTTCTTGCTGAAACTTCTAATGTTCAGGTTGATAACCTAGATTCTCTAGTGCATCGGGCCATTGCTGCTGCATCTGCTGTTCCTGATCTTCAAGATCGGTATGACAAGATCCCTAGCTACATTGAATCAAAACTTTTGCCATTTCAGCGAGAAGGGATTAGGTTTATATTGCAGCATGGAGGGCGGGCTCTTTTAGCTGATGAAATGGGACTAGGGAAAACTTTGCAGGCCATTGCTGTAACTTCATGCATTCCTGAGTCATGGCCTGTGCTCATACTCGCTCCATCTTCATTACGGTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTGTTGTGCTATCTCAAAGTGGTGGATCAAATAAAGGAGGCTTCACTATAGTATCTTCTAATACAAAAAGCAGTATCCATCTAGATGGAGTGTTCAACATCATCTCGTATGATTTGGTTCCAAAGCTACAGAACATGCTTATGGCATCTGACTTTAAGGTTGTGATTGCAGATGAGTCACACTTTCTGAAAAATGCTCAAGCAAAGAGGACTACTGCTTCTCTTCCGGTTATAAAGAAAGCTCAGTATGCAATATTGCTTAGTGGAACTCCTGCTTTGTCCCGGCCAATTGAACTATTCAAGCAGCTGGAAGCACTGTATCCTAATGTGTATAGAAACGTCCATGAATATGGTAACAGATACTGCAAGGGTGGATTATTTGGACAATACCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATTAAGGCAACAGTGATGATTCGAAGGCTTAAAAAGGACGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAGGTCTTCCTAGATTTGAATGCCAAGGATATGAAGCAGATCAATGCTTTATTTCGGGAGTTGGAGGTTGTTAAAGCCAAAATTAAGGCAGCCAAATCAAAGGATGAGGCTGAAACGCTTAAGTTTACTCAAAAGAATCTTATTAACAAGATATATACTGAATCTGCTGCAGCCAAAATCCCATCAGTTCTTGATTATATTGGAACTGTTATTGAGGCAGGTTGCAAGTTTCTGATATTTGCACATCATCAGCCAATGATAGATTCAATACATGATTTTCTAATTAAAAAGAAGGTGAGTTGCATCCGCATTGATGGCAACACGGCCCCTGCATCGAGGCAAGCATTGGTTACAGATTTTCAGGAAAAGGATTCTATCAAGGCAGCTGTGCTATCTATCAAAGCTGGCGGAGTTGGGTTAACTTTAACTGCTGCAAGCACTGTCATTTTTGCAGAACTGTCCTGGACCCCAGGTGACCTAATTCAAGCAGAAGATCGTGCTCATAGAATTGGCCAGGTATCTTCAGTGAACATATACTACTTGCTAGCAAATGACACAGTCGATGACATCATATGGGATGTAGTGCAGAGCAAATTGGAAAATTTGGGACAGATGTTAGATGGCCATGAGAACATCATGGAGGTTGCAGCCAATCAGCCAGGGAATAGCCCTGCAAAGCAGCAAACTCTTGACTGCTTTGTGAAAAGATGTAATAACATGGACAAACCAGAACAACAGACTGACCCGAAACGCCCCCGATACTGA 2103 0.4204 MELSSMELDDWDLSAEDLDSLEKDAFQKIAQLRNSSCSASVSSSNTQQFNVHQQQSAKPWGNDLERSPAKPISDCRHERVEALSPQSRALPSSLKSGTNNDDHSKEMPKVSVKLFLHSSGDVAAKFQYNQTVISAIRRVPKSTWNAKERLWMFPLSSLSAAEKVLAETSNVQVDNLDSLVHRAIAAASAVPDLQDRYDKIPSYIESKLLPFQREGIRFILQHGGRALLADEMGLGKTLQAIAVTSCIPESWPVLILAPSSLRLQWASMIQQWLNIPSSDILVVLSQSGGSNKGGFTIVSSNTKSSIHLDGVFNIISYDLVPKLQNMLMASDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPNVYRNVHEYGNRYCKGGLFGQYQGASNHEELHNLIKATVMIRRLKKDVLSQLPVKRRQQVFLDLNAKDMKQINALFRELEVVKAKIKAAKSKDEAETLKFTQKNLINKIYTESAAAKIPSVLDYIGTVIEAGCKFLIFAHHQPMIDSIHDFLIKKKVSCIRIDGNTAPASRQALVTDFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENIMEVAANQPGNSPAKQQTLDCFVKRCNNMDKPEQQTDPKRPRY 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0720 700 Pfam SNF2-related domain 226 488 IPR000330 GO:0005524|GO:0140658
Alju06g0720 700 ProSiteProfiles HARP domain profile. 106 177 IPR010003 -
Alju06g0720 700 FunFam Chromatin remodeling factor18 181 455 - -
Alju06g0720 700 CDD DEXHc_HARP_SMARCAL1 208 431 - -
Alju06g0720 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 431 IPR027417 -
Alju06g0720 700 SMART helicmild6 534 617 IPR001650 -
Alju06g0720 700 MobiDBLite consensus disorder prediction 69 83 - -
Alju06g0720 700 CDD SF2_C_SNF 504 628 - -
Alju06g0720 700 SMART ultradead3 204 397 IPR014001 -
Alju06g0720 700 Gene3D - 181 437 IPR038718 -
Alju06g0720 700 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 508 656 IPR001650 -
Alju06g0720 700 MobiDBLite consensus disorder prediction 37 106 - -
Alju06g0720 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 660 IPR027417 -
Alju06g0720 700 Pfam Helicase conserved C-terminal domain 516 617 IPR001650 -
Alju06g0720 700 Coils Coil 460 480 - -
Alju06g0720 700 Gene3D - 470 695 IPR027417 -
Alju06g0720 700 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 217 389 IPR014001 -
Alju06g0720 700 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 9 692 - -
Alju06g0720 700 MobiDBLite consensus disorder prediction 37 61 - -
Alju06g0720 700 FunFam Chromatin remodeling factor18 466 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0720 Alju-ChrAlju06 6438721 6460338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0720 514 657 RAD5 or RAD16-like Gene Family AT1G11100 34.722 1.40e-17 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju06g0720 SNF2_N 2.1e-28 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g0720 06 6438721 6460338 Alju06g0720 06 6438721 6460338 ECH