Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0700 ATGGCCCTTTCTTCTTCAACCAAAATGGTGTCTGCAAAACCCATCATCTCGTTTATTTTCTTGGTTATTCTGATTCTGGGCTTGTTGATCCCTATTAGTGATGCTGGTGGCAGTGATTTTAAGGGGTTAGAGTACTTGAAAGTTTCATCTTCAGATTTCAGAGGCTCTGTTCATGGAGTCATTGATGCTTTGCAACATGCTTCCTCCATCATGTCCAGGCTTCCCAATGGACGAGATTTTCGTCTCTCCAATGCCATTTCCGACTGTCTCGACTTGCTCGATTTGTCTTTTGATGATCTCCAGTTGTCTTCCTCAGCTACCGAGAATCCCTCAGGCCAGAAAAACGGCACCGGGAACTTGGGCTCTGATCTGAGAACATGGCTGAGTGCTGCACTTGCAAATCCACAGACATGCATGGAAGGATTCGATGGCATCAATAGCATTGTAGATAATCTAGTATCAGTTCTTATGAGCCAAATGATTTCATCGATCCAGCAACTCCTAACCCAGGTTCAACATGAACCGGACGATGACTTCTCTACAAGCAAGGTACAGTTCCCTTCATGGGTCAAACCAAGGGACCAGAAGCTCCTACAATCAGATAAGATTAATGCAGATGTTTTAGTAGCAGCAGATGGAACTGGGACATTCAATAGTGTATCAGATGCAGTGGAAGCAGCTCCTGATTATAGCATGAAACGTTTTGTGATATATGTAAAGAGGGGTCTGTACAAAGAGAATGTGGATATCAAGAAGAAGAAGTGGAACATCATGATGATTGGTGAAGGCATGGACGCCACCGTTATCTCCGGTAACCGGAATTTCATCGACGGTTGGACCACATACCGATCGGCTACTTTCGCCGTTAGTGGGAGAGGATTCATAGCACGAGACATAACCTTCCAGAACACGGCAGGTCCACAAAAGCACCAAGCAGTGGCACTAAGATCAGACTCAGACCTCTCAGTATTCTACCGCTGCGGCATCTACGGCTACCAAGACAGCCTCTTCACACACACAATGCGACAATTCTACAGAGAATGTAAAATAAAAGGTACGGTGGATTTCATCTTCGGGGACGCCACAGCAGTGTTCCAAAAGTGCCAAATCCTCGCCAGAAAAGGCCTTCCAGGTCAGAAAAACATAATCACAGCGCAAGGAAGAAAAGACCCACATGAGCCAACCGGATTCTCCCTCCAATTCTGCAAAATCTCTGCAGATTCAGACCTTCTTCCTTTTGTTGGATCCATTGAAACATACCTGGGAAGGCCCTGGCGGGCATTTTCTCGAACAGTTTATATGCAATCTTACATGAGCGATTTGGTGGACCCACGAGGATGGCTTGACTGGAACGGAGATGAATCTTCGTTGGGCACACTTTATTATGCAGAGTATATGAATGGTGGTCCTGGGGCTGCTTTGGAGAAGCGAGTGAAATGGCCTGGCTTTCATGAGTTGAAGGATGCCAAGCAGGCTTATCAATTCACTGTAGCTGATTTTATTCAAGGTGATTTATGGCTGCCTCACACTGGTGTGATGTACACATCTGGTTTAAGCGCTTGA 1563 0.4581 MALSSSTKMVSAKPIISFIFLVILILGLLIPISDAGGSDFKGLEYLKVSSSDFRGSVHGVIDALQHASSIMSRLPNGRDFRLSNAISDCLDLLDLSFDDLQLSSSATENPSGQKNGTGNLGSDLRTWLSAALANPQTCMEGFDGINSIVDNLVSVLMSQMISSIQQLLTQVQHEPDDDFSTSKVQFPSWVKPRDQKLLQSDKINADVLVAADGTGTFNSVSDAVEAAPDYSMKRFVIYVKRGLYKENVDIKKKKWNIMMIGEGMDATVISGNRNFIDGWTTYRSATFAVSGRGFIARDITFQNTAGPQKHQAVALRSDSDLSVFYRCGIYGYQDSLFTHTMRQFYRECKIKGTVDFIFGDATAVFQKCQILARKGLPGQKNIITAQGRKDPHEPTGFSLQFCKISADSDLLPFVGSIETYLGRPWRAFSRTVYMQSYMSDLVDPRGWLDWNGDESSLGTLYYAEYMNGGPGAALEKRVKWPGFHELKDAKQAYQFTVADFIQGDLWLPHTGVMYTSGLSA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0700 520 Gene3D - 200 518 IPR012334 -
Alju06g0700 520 SUPERFAMILY Pectin lyase-like 204 517 IPR011050 -
Alju06g0700 520 SMART PMEI_2 31 167 IPR006501 GO:0004857
Alju06g0700 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 171 IPR035513 -
Alju06g0700 520 Pfam Pectinesterase 206 504 IPR000070 GO:0030599|GO:0042545
Alju06g0700 520 Pfam Plant invertase/pectin methylesterase inhibitor 61 151 IPR006501 GO:0004857
Alju06g0700 520 CDD PMEI-like_4 37 172 - -
Alju06g0700 520 PANTHER PECTINESTERASE 57 508 - -
Alju06g0700 520 FunFam Pectinesterase 200 518 - -
Alju06g0700 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 155 IPR035513 -
Alju06g0700 520 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0700 Alju-ChrAlju06 6212459 6215566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0700 17 518 Carbohydrate Esterase AT3G43270 57.390 0.0 625