Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0594 ATGGATCTTGCAGGAAGAAGATTCTTAATTTCTGGGTCACACCCACTTTCGCCATTATCAAGCCCAGTGAGCTCAATCCTTCGCCCACATTCACATTCTGCGAATACCAGTTTCCCCATTATAGCTATCGCTATAATAGGAATACTAGCCACAGCTTTCTTGCTCGTTAGCTACTATATCTTCGTCATCAAATGCTGCCTCAATTGGCACCGCATAGATCTCCTTCGACGGTTCTCTCCGTCCCGGCGGCGAGAAGAGCCGCCGATGACATACTCGCCGCCGGGCACAGAGCCTCGAGGACTCGACGAGGCGGTGATCCGACTAATACCAGTCATCCATTACAAAATAGAGGGAAACAGAGAATCCGGAGAGCGAAGCTTCACGGAATGCTCTGTTTGCTTGAACGAGTTTCGCGAGAAGGAGAAGCTGAGGATTATACCGAATTGCGGCCATGTGTTTCACATAGATTGTATCGATGTTTGGCTTCAGAACAACGCGAATTGCCCACTTTGCAGAACCAGCATTTCTCTTTCAAGCAGATTCCAAATCGATCAGATTCTAAATCCCAGAATCCCCTCACAAGATCGACGCTTGCACGGCGAAAATCTCACCACCGGCGATGAAGATTTCGTCGTGATTGAACTGAGCACTAATGGCCACGATAGAGACCAGAACTGGAACAGAACACAGGAAAGAGAGAACCCACCACGAGAGGTGAGTCCCTCGCCTATTAAGAAAAAACCATGGAAGTTTCAGAAAGTGACGAGCATGGGAGATGAGTGCATCGATACTAGAGGTAAAGATGAGATTTTTTCAGTACAGCCGATAAGGAGGTCGTTTTCCATGGATTCTTCAGGGGATAGGCAGTTGTACATGGCAGTTCAAGAAGCTTTGAAGAAACACAATAGGCAAGAAGTGAGTGAGGTATCATCGTCCTCCATGGAAGGTTGTAGTAGTAGTAATAGTGGTAAAGTAAAGAGGTCATTTTTTTCCTTCGGACATGGTAGTAGTAGATCCAGAAGTTCAGTCCTACCTGTTTCTGTGGACCACTAA 1053 0.4672 MDLAGRRFLISGSHPLSPLSSPVSSILRPHSHSANTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRREEPPMTYSPPGTEPRGLDEAVIRLIPVIHYKIEGNRESGERSFTECSVCLNEFREKEKLRIIPNCGHVFHIDCIDVWLQNNANCPLCRTSISLSSRFQIDQILNPRIPSQDRRLHGENLTTGDEDFVVIELSTNGHDRDQNWNRTQERENPPREVSPSPIKKKPWKFQKVTSMGDECIDTRGKDEIFSVQPIRRSFSMDSSGDRQLYMAVQEALKKHNRQEVSEVSSSSMEGCSSSNSGKVKRSFFSFGHGSSRSRSSVLPVSVDH 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0594 350 SMART ring_2 130 171 IPR001841 -
Alju06g0594 350 PANTHER RING-H2 FINGER PROTEIN ATL16 21 346 IPR044600 GO:0016567|GO:0016740
Alju06g0594 350 MobiDBLite consensus disorder prediction 224 244 - -
Alju06g0594 350 Pfam Ring finger domain 129 172 IPR001841 -
Alju06g0594 350 CDD RING-H2_EL5-like 129 172 - -
Alju06g0594 350 MobiDBLite consensus disorder prediction 307 350 - -
Alju06g0594 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 177 IPR013083 -
Alju06g0594 350 MobiDBLite consensus disorder prediction 220 247 - -
Alju06g0594 350 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Alju06g0594 350 MobiDBLite consensus disorder prediction 302 350 - -
Alju06g0594 350 FunFam E3 ubiquitin-protein ligase ATL6 91 178 - -
Alju06g0594 350 SUPERFAMILY RING/U-box 129 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0594 Alju-ChrAlju06 5011363 5012415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0594 29 349 C3H Transcription Factor Family AT1G04360 53.390 5.31e-109 322