Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0571 ATGGCAGATCTTGATGGCAATGTAAATGTTGAGCAAGCTGTCTTCAGAAGATATTTGTGTCCTGAAAAGGATTCTCTATCATTTTCTCTTCTTTACAGAAACTCTGAACGGTCACTTAATCTGGTCAGAAAAGTTATTTGTAAGGATAAAGCTGAAACAGATGTATGGTTTACAGGCCTCAAGGCATTAGTATCTCCTGGTCGACGTCACAGGCATAGGCATACCAGAAGTGACTTTTCTAATGTGAGATTTAACCTGCAAGGGAGCATTGACTTTACTTATGATAGTCATCCTTTTAGTGCAACGGTAGAGTATCCTTCAAACAGTCCTCATGGTCGAGTTTCCATTGATTCAGTTTCTCGTGACACTTTATTGAATTGGGTAAACTCAGATGTGGGGTTAGAACGTGTAAATATGCAATTGAGGGGAGGAGCTGGAGACAATTTCCGTCTTAGTGTGTCAAGTGCAGGATCTGGAATAGATGACATAGAATCACTTGGAGATGTTTATGTATGGGGAGAGGTTTGGGCAGATGGGGTTTCATCTGATGGATTGGGGAATCAAGTCCCTGTGAAGACAGATGTCTTGATTCCCAAATCATTAGAGTCAAATGTTGTTCTTGATGCTCAACAGATTGCATCTGGCATCCGCCATACCGCCCTAGTTACAAGGCAAGGAGAGCTTTTTACTTGGGGAGAAGAATGTGGGGGAAGACTTGGTCATGGGATTGATAAAGACTTTAGCCGCCCTTGTCTGGTTGAATTCCTGGCAGTCACTAACGTGGAATTTGTAGAGTGTGGAGAGTATCATACATGTGCTGTATCTACATCCGGTGATTTATTCTCTTGGGGTGATGGTACCCACGGTGCTGGACTTCTTGGTCATGGAAATGACATTAGCCACTGGATACCAAAGAGAATCATTGGCCCTTTAGAAGGACTTCAAGTTATATCTGTTGCATGTGGCACATGGCATTCAGCATTGGCAACCTCCAATGGGAAATTGTTTACCTTTGGTGATGGAGCTTTTGGTGTCTTGGGCCATGGAGATGTACAGAGTGTGCCATATCCAAAGGAGGTGCAATCATTGAGCGGACTAAAGACCGTTAAGGTTGCATGTGGAGTATGGCACACCGCAGCTATTGTAGAGGTTATGGGCCAAACTGGTTCAAATGTCTCATCTAGGAAGCTCTTTACTTGGGGTGATGGTGACAAATATCGTTTGGGTCATGGTAACAAGGAAACTTACCTCCAACCCACCTGTGTCTCTGCACTCATTGAATACAATTTCCAACAGGTAGCATGTGGGCACATTTTGACAGTCGCCCTCACTACAGCAGGTCAAGTCTTCACTATGGGAGGCACAGCATATGGTCAACTAGGGAATCCTCTCTCTGATGGAAAATCACCTATCATGGTACAAGATAAGCTGGTTGGTGAATTTGTTGAGGAAATAGCGTGTGGAGAACATCATGTTGCTGCCTTGACGTCAAGAAGTGAGTTATATACTTGGGGGAAAGGTGCCAATGGAAGATTGGGACATGGAGACACACACGATCGAAAATCTCCTGCATTGGTTGAATGCTTGAAAGATAAGCATGTAAAAAGTATCTCATGTGGCTCCAACTTCATGACTTGTATTTGCATCCATAAATGGGTCTCTGGAGTTGACCAATCTGTTTGCTCTGGATGCCGGCAAGCATTTGGTTTTACTAGAAAAAGGCACAATTGCTATCATTGTGGATTGGTGCATTGTCATTCTTGTAGCTCTAAGAAGGCACTGAAAGCAGCATTAGCTCCAACGCCCGGAAAACCACATCGTGTCTGTGATGCATGTTATGCAAAACTTAAAACTGCTGAGATCGGCCATGCTTCCACTTTTAGCAGAGGAACTACGCCTCCACGTAGATCAATAGATAATAGAGAACGAATAGAATGGGTAGAGGCAAAGTCTTCAAGAGTTCTCTTATCTCCCATCAAAGAACCTGTAAAATACCTTGAGATAAGGACTAATAAACCAGGAACTAGATCTGATTCCTCTTCCATAGTTCGACCTTCTCAAGTTCCATCTCGTTTACAGTTAAAAGATGTTGCATTTCCAAGTTCGCTGAGCACCATTCAGAATGCTTTCAAGCCTGTTGTTATACCTCCTAGTCCACCACGAACCCCACCTGCCAATTCTAGATCCTCATCACCATATGCAAGAAGACCCAGCCCACCTCGTTCACCCGTTCCCGGATTTTCTAAAAGTATTATAGATAGTTTGAGGAGGACCAATGACATTTTGAATCAAGAAGTCTCGAAAATGCATAAACAAATTCGAAGTTTGAAGCAGAAGAACGAAACACAAGATAAGGAGATACAGAAGCTTCAGAAAAATGTTGAGGAAGCCACCTCATTGGCTTGGGATATATATTCCAAGCATCAAGTAGCAAATGAATTTATTAAGTCCATAAAAGATCAGCTGAAGGAAATGACCAACAAGCTGCCACCAAAGGTTTCTGACTGTAATAGCTTGAAAATCATGCACGACCAAGCAGAAGATTTTCTAAGAAAAATTGCAGAATCTGAAACTCCTTCCTCTCTACCATCAAACTTACAGTCTGATCAACTAAATGCAACTACTGATATAACTGCTTCAGATGGTGACAATGCTAAACCACGAGAACTAAAACCGGAGGACAATGAAGATGCTGCAGGAATCGATTCATCTCAAGATGGTGGAAAAGTTCAAGAAAGTAATGGACCGTCTGCTTCTTCTGGAGGAGCAGCAGTGGCTCCACAAAGTTCAAAGCATGGTTCAGGCTCACTGAACTCTTCAAGACCTAGGATTGAAGGAGAAACAGAGACCGATGAACAATTTGCACCCGGTGTGTTCGTGACAGTCATAGTGCGGCCCGGTGGTAATAAAATTTTCAAACGAGTTAGATTCAGCAAGCGAAGGTTCGATGAACAACAGGCAGAAGAATGGTGGAGCAAAAACAAAGATAAGGTGCTTAGGAAATATAGTCCATCGGCAACAAATTTTGCAGCTACCTGCAGGGCCACCTAG 3051 0.43 MADLDGNVNVEQAVFRRYLCPEKDSLSFSLLYRNSERSLNLVRKVICKDKAETDVWFTGLKALVSPGRRHRHRHTRSDFSNVRFNLQGSIDFTYDSHPFSATVEYPSNSPHGRVSIDSVSRDTLLNWVNSDVGLERVNMQLRGGAGDNFRLSVSSAGSGIDDIESLGDVYVWGEVWADGVSSDGLGNQVPVKTDVLIPKSLESNVVLDAQQIASGIRHTALVTRQGELFTWGEECGGRLGHGIDKDFSRPCLVEFLAVTNVEFVECGEYHTCAVSTSGDLFSWGDGTHGAGLLGHGNDISHWIPKRIIGPLEGLQVISVACGTWHSALATSNGKLFTFGDGAFGVLGHGDVQSVPYPKEVQSLSGLKTVKVACGVWHTAAIVEVMGQTGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFQQVACGHILTVALTTAGQVFTMGGTAYGQLGNPLSDGKSPIMVQDKLVGEFVEEIACGEHHVAALTSRSELYTWGKGANGRLGHGDTHDRKSPALVECLKDKHVKSISCGSNFMTCICIHKWVSGVDQSVCSGCRQAFGFTRKRHNCYHCGLVHCHSCSSKKALKAALAPTPGKPHRVCDACYAKLKTAEIGHASTFSRGTTPPRRSIDNRERIEWVEAKSSRVLLSPIKEPVKYLEIRTNKPGTRSDSSSIVRPSQVPSRLQLKDVAFPSSLSTIQNAFKPVVIPPSPPRTPPANSRSSSPYARRPSPPRSPVPGFSKSIIDSLRRTNDILNQEVSKMHKQIRSLKQKNETQDKEIQKLQKNVEEATSLAWDIYSKHQVANEFIKSIKDQLKEMTNKLPPKVSDCNSLKIMHDQAEDFLRKIAESETPSSLPSNLQSDQLNATTDITASDGDNAKPRELKPEDNEDAAGIDSSQDGGKVQESNGPSASSGGAAVAPQSSKHGSGSLNSSRPRIEGETETDEQFAPGVFVTVIVRPGGNKIFKRVRFSKRRFDEQQAEEWWSKNKDKVLRKYSPSATNFAATCRAT 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0571 1016 CDD FYVE_like_SF 561 613 - -
Alju06g0571 1016 SUPERFAMILY FYVE/PHD zinc finger 551 618 IPR011011 -
Alju06g0571 1016 Pfam FYVE zinc finger 551 617 IPR000306 GO:0046872
Alju06g0571 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 395 446 IPR000408 -
Alju06g0571 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 278 332 IPR000408 -
Alju06g0571 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 447 498 IPR000408 -
Alju06g0571 1016 SMART fyve_4 549 618 IPR000306 GO:0046872
Alju06g0571 1016 MobiDBLite consensus disorder prediction 906 943 - -
Alju06g0571 1016 ProSiteProfiles BRX domain profile. 948 1003 IPR013591 -
Alju06g0571 1016 MobiDBLite consensus disorder prediction 712 748 - -
Alju06g0571 1016 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 28 823 - -
Alju06g0571 1016 Gene3D - 290 388 IPR009091 -
Alju06g0571 1016 Gene3D - 140 289 IPR009091 -
Alju06g0571 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 226 277 IPR000408 -
Alju06g0571 1016 Gene3D - 9 73 IPR011993 -
Alju06g0571 1016 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 371 381 IPR000408 -
Alju06g0571 1016 Gene3D - 389 556 IPR009091 -
Alju06g0571 1016 Pfam Transcription factor regulating root and shoot growth via Pin3 948 1002 IPR013591 -
Alju06g0571 1016 MobiDBLite consensus disorder prediction 882 898 - -
Alju06g0571 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 397 443 IPR000408 -
Alju06g0571 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 500 547 IPR000408 -
Alju06g0571 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 277 328 IPR000408 -
Alju06g0571 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 226 274 IPR000408 -
Alju06g0571 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 447 495 IPR000408 -
Alju06g0571 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 332 381 IPR000408 -
Alju06g0571 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 550 IPR000408 -
Alju06g0571 1016 PRINTS Chromosome condensation regulator RCC1 signature 319 335 IPR000408 -
Alju06g0571 1016 PRINTS Chromosome condensation regulator RCC1 signature 335 349 IPR000408 -
Alju06g0571 1016 PRINTS Chromosome condensation regulator RCC1 signature 436 454 IPR000408 -
Alju06g0571 1016 PRINTS Chromosome condensation regulator RCC1 signature 228 244 IPR000408 -
Alju06g0571 1016 PRINTS Chromosome condensation regulator RCC1 signature 278 294 IPR000408 -
Alju06g0571 1016 PRINTS Chromosome condensation regulator RCC1 signature 494 515 IPR000408 -
Alju06g0571 1016 Coils Coil 752 800 - -
Alju06g0571 1016 Pfam Transcription factor BRX N-terminal domain 806 837 IPR027988 -
Alju06g0571 1016 FunFam PH, RCC1 and FYVE domains-containing protein 1 144 386 - -
Alju06g0571 1016 SUPERFAMILY RCC1/BLIP-II 166 552 IPR009091 -
Alju06g0571 1016 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 555 617 IPR017455 -
Alju06g0571 1016 MobiDBLite consensus disorder prediction 876 952 - -
Alju06g0571 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 333 384 IPR000408 -
Alju06g0571 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 557 628 IPR013083 -
Alju06g0571 1016 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 212 222 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0571 Alju-ChrAlju06 4687758 4694071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0571 945 1003 Major Intrinsic Protein MIP AT1G31880 40.678 3.52e-08 55.1