Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0530 ATGGATTCGGATCAAGGGAAGCTTTTTATTGGTGGGATATCGTGGGACACGACGGAGGACAAGCTCAAAGATCATTTCAGCAACTACGGTGATGTTTTGCACGCCTCCGTTATGAGAGAGAAGAGCACTGGGAAGCCCAGAGGCTTTGGATTCGTTGTGTTCGCAGATCCTTCGATTCTCGATAGGGTTCTCGAGGAGAAGCACGTAATCGATGGAAGAACGGTGGATGCCAAGAAGGCCCTCTCCAGAGAGGATCAACAAATTTCAGGCACTTCCAGGGCTGGAAATCCCAACTCTTATAGAAATTCTGGAAATGGTGGAAATATCAGGACCAAAAAGATATTTGTTGGTGGGTTGCCTCCTACGTTGACCGAAGAGAAGTTTCGTCAGTATTTTGAGGCATATGGTATTGTTACTGATGTAGTAGTAATGTATGACCAGAATACTGGACGGCCACGTGGATTTGGGTTTATTTCGTTTGACACTGAAGATGCAGTTGACAGGGTTTTGCACAAGCCATTTCACGATTTAAATGGTAAGCAAGTAGAAGTGAAGCGTGCACTTCCAAAGGATGCTAATCCAGGTGCAAGTGGCCGTATGGGTGGTGCAGGGGGAGGTGGCAGTGGTTATCAGGGGTACGGGGCATCTGGTGGCAACCAAAATTCATATGATGGCCGGATGGATTCTGGTAGGTATGTGCAGCCTCAAAGCGCTGGGGGTGGATTTCCACCATATGGTTCTTCTGGATATAGTACTCCTGGTTATGGTTATGGTCCTGCTAATAATGGCATGGGTTATGCCGGATATGGAAGTTATGGTGGCGCAAGCACTGGGTATGGTGGACCTGCTGGTGCAACCTATGGGAATCCCAACATCCCTAATGCTGCTTTTGCTGGTGGCCCGCCTGGTGGCCCAAGGAGTTCATGGCCTGCTCAAGCTCCCTCTGGTTATGGTTCTATGGGGTATGGGAATACTGCTGCTTGGGGTGCTCCAGGTGGCGGTGCTGCATCTGGTGGCGGCAGCGGCCCTGGTTCAGCCCCTGCAGGTCAATCACCCAGTGGATCTGCTGGTTATGGGAATCAAGGGTATGGTTATGGTGGTTATGGTGGGTATGGTGGAAGTGATAGTTCTTATGGGAACCCTGGCACATATGGTGCTGTTGGTGGGCGTTCTGGAAGTGCCCCAAACAGCTATGCCAGTGGTCCAGGAGGAAATGAACCACAAGGGAATGGTGGCAGCTACAATGGAAGTGGCTATGGTGATGCTAATGGAAATTCAGGATATGGAAATGCTGCATGGAGATCAGAACCTGCACAACCATCTGGAAATTATGGGACTTCTCAAGTAAATGGTCCTCATGGTGGGCAAGTTGGTTATGGCGGCAGCTATGGTGGTGCACAGTCACGGCAGGCCCAACAGCAGTAA 1425 0.5004 MDSDQGKLFIGGISWDTTEDKLKDHFSNYGDVLHASVMREKSTGKPRGFGFVVFADPSILDRVLEEKHVIDGRTVDAKKALSREDQQISGTSRAGNPNSYRNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFEAYGIVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHKPFHDLNGKQVEVKRALPKDANPGASGRMGGAGGGGSGYQGYGASGGNQNSYDGRMDSGRYVQPQSAGGGFPPYGSSGYSTPGYGYGPANNGMGYAGYGSYGGASTGYGGPAGATYGNPNIPNAAFAGGPPGGPRSSWPAQAPSGYGSMGYGNTAAWGAPGGGAASGGGSGPGSAPAGQSPSGSAGYGNQGYGYGGYGGYGGSDSSYGNPGTYGAVGGRSGSAPNSYASGPGGNEPQGNGGSYNGSGYGDANGNSGYGNAAWRSEPAQPSGNYGTSQVNGPHGGQVGYGGSYGGAQSRQAQQQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0530 474 CDD RRM2_Hrp1p 113 190 - -
Alju06g0530 474 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Alju06g0530 474 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Alju06g0530 474 MobiDBLite consensus disorder prediction 84 107 - -
Alju06g0530 474 Gene3D - 4 88 IPR012677 -
Alju06g0530 474 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Alju06g0530 474 MobiDBLite consensus disorder prediction 376 474 - -
Alju06g0530 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Alju06g0530 474 MobiDBLite consensus disorder prediction 333 355 - -
Alju06g0530 474 SMART rrm1_1 7 78 IPR000504 GO:0003723
Alju06g0530 474 SMART rrm1_1 113 185 IPR000504 GO:0003723
Alju06g0530 474 FunFam heterogeneous nuclear ribonucleoprotein 1 107 226 - -
Alju06g0530 474 Gene3D - 107 230 IPR012677 -
Alju06g0530 474 MobiDBLite consensus disorder prediction 80 107 - -
Alju06g0530 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Alju06g0530 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Alju06g0530 474 SUPERFAMILY RNA-binding domain, RBD 111 219 IPR035979 GO:0003676
Alju06g0530 474 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 474 - -
Alju06g0530 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Alju06g0530 474 MobiDBLite consensus disorder prediction 393 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0530 Alju-ChrAlju06 4295898 4298184 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0530 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.519 3.11e-10 60.5