Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0528 ATGGATTCAGATCAAGGGAAGCTTTTTATTGGCGGGATATCGTGGGATACGACGGAGGACAAGCTCAAAGATCATTTCAGCAACTACGGTGATATTTTGCACGCCTCCGTTATGAGAGAGAAGAACACTGGGAAGCCCAGAGGCTTTGGATTTGTTGTGTTCGCAGATCCTTCGATTCTCGATAGGGTTCTCGAGGAGAAGCACGTAATCGATGGAAGAACGGTAGATGCCAAGAAGGCCTTCTCCAGAGAGGATCTACAAATTTCAGGCAGCTCCCGGGCTGGAAATCCCAACTCTTATAGAAATTCCGGAAATGGTGGAAATATCAGGACCAAAAAGATATTTGTTGGTGGGTTGCCTCCTACGCTGACTGAAGAGAAGTTTCGTCAGTATTTTGAGGCCTATGGTCATGTTACTGATGTAGTAGTAATGTATGACCAGAATACTGGACGGCCACGTGGATTTGGATTTATTTCATTTGACACTGAAGATGCAGTTGACAGGGTTTTGCACAAGTCATTTCACGACTTAAATGGTAAGCAAGTAGAAGTGAAGCGTGCACTTCCAAAGGATGCTAATCTGGGTGCAAGTGGCCGTATGGGTGGTGCCGGGGGAGGTGGCAGTGGATATCAGGGGTACGGGGCATCTGGTGGCAACCAAAATGCATATGATGGCCAGATGGATTCTGGTAGGTATGTGCAGCCTCAAAGCGCCGGGGTTGGATTTCCACCTTATGGTTCTTCTGGATATAGTGCTCCTGGATACGGTTATGGTCCTGCTAATAATGGCATGGGTTATGCCGGATATGGAAGTTATGGTGGCACAAGCACTGGGTATGGTGGACCTGCTGGTGCAACCTATGGGAATCCCAACATCCCTAATGCTGCTTTTGCTGGTGGCCCAAGGAGTTCATGGCCTGCTCAAGCTCCTTCTGGTTATGGTTCTATGGGGTATGGGAATACTGCTGCTTGGGGTGCTCCTGGTGGCGGCAGTGGCCCCGGTTCAGCACCTGCAGGTCAATCACCCAGTGGAGCTGCTGGTTATGGAAATCAAGGGTATGGTTATGGTGGGTATGGTGGAAGCGATAGTTCTTATGGGAACCCTGGTGTATACGGTGCCGTTGGCGGGCGTTCCGGAAGTGCCCCAAATAGCTATGCCAGTGGTCCAGGAGGAAATGAACCACAAGGGAGTGGTGGCAACTACAATGGAAGTGGCTATGGTGATGCAAATGAAAATTCAGAATATGGTAATGCTGCATGGAGATCCGAACCTTCGCAACCATCTGGAAATTATGGGACTCCTCTTGTAAGTGGTCCTCATGGCGGGCAAGTTGGTTATGGCAGCAGCTATGGTGGTGCACAGACACGGCAGGCCCAACAGCAGTAA 1386 0.4964 MDSDQGKLFIGGISWDTTEDKLKDHFSNYGDILHASVMREKNTGKPRGFGFVVFADPSILDRVLEEKHVIDGRTVDAKKAFSREDLQISGSSRAGNPNSYRNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHKSFHDLNGKQVEVKRALPKDANLGASGRMGGAGGGGSGYQGYGASGGNQNAYDGQMDSGRYVQPQSAGVGFPPYGSSGYSAPGYGYGPANNGMGYAGYGSYGGTSTGYGGPAGATYGNPNIPNAAFAGGPRSSWPAQAPSGYGSMGYGNTAAWGAPGGGSGPGSAPAGQSPSGAAGYGNQGYGYGGYGGSDSSYGNPGVYGAVGGRSGSAPNSYASGPGGNEPQGSGGNYNGSGYGDANENSEYGNAAWRSEPSQPSGNYGTPLVSGPHGGQVGYGSSYGGAQTRQAQQQ 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0528 461 CDD RRM2_Hrp1p 113 190 - -
Alju06g0528 461 MobiDBLite consensus disorder prediction 381 433 - -
Alju06g0528 461 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Alju06g0528 461 Gene3D - 4 86 IPR012677 -
Alju06g0528 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Alju06g0528 461 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 461 - -
Alju06g0528 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Alju06g0528 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Alju06g0528 461 MobiDBLite consensus disorder prediction 86 107 - -
Alju06g0528 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 93 IPR000504 GO:0003723
Alju06g0528 461 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Alju06g0528 461 SMART rrm1_1 113 185 IPR000504 GO:0003723
Alju06g0528 461 SMART rrm1_1 7 78 IPR000504 GO:0003723
Alju06g0528 461 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Alju06g0528 461 FunFam heterogeneous nuclear ribonucleoprotein 1 107 226 - -
Alju06g0528 461 MobiDBLite consensus disorder prediction 381 461 - -
Alju06g0528 461 SUPERFAMILY RNA-binding domain, RBD 111 219 IPR035979 GO:0003676
Alju06g0528 461 Gene3D - 106 231 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0528 Alju-ChrAlju06 4290687 4292956 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0528 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.038 2.09e-09 57.8