Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0510 ATGAACTTGGTTCCACCACAACGCCGATCCTCACGATTCCTTGCTTGTTCCTGTTTCATCGTCGACGTTAATCAGCGAAGCCCAGCGCAATCAGTTTCCATCAGCAGCCAAAACGCTTGCTTTCTTCGGTTTTTCTTCAAGATCTCGTCCAAAAACAAGTGGGTTTTGAATTTGTTCATCTTTTTGTATCCGAAGGTGAAGGTCAGACAAGAACAATACCAAGAGGATCACCGGGTAATACAGGACAATAATTTGAAAGCTTTGCAGTCTCTATCGTTGCGGGTTTCTCCTCCTCCAGTGAGGAACCAGAAAGGTGTGTCTCATCCATCCTCTGCTGAAGCACCTAAATGTTATGTTCTACATACACCTAAACCAAGAGTGCCTGTTTCTGAAGATTTAGGAGCCTGTAATTTGGCAGCAGATTCTTCAGGACTTGCAGCGCAAGAGAAGGATGACAATATTGATGAGGACAGAGTAAATATTAGAGCCAGTTCAGTTCCACCGCCTCGTGCTGTTATATCAAGTCCAGATAATGACACAATGATTGGGAATAAAAATCGGATTAAAGGCAGGGAAAGACTTCCAGGTTCAAAGAACTATGGTGTGCTACAAAATAGACATGCACATTGTAAAGTTAAATCAGGCAACGTTACTGAAAATCCCCCAAACGTGAGAAAACCCAAGAAAGCTGCAGATAAATCAAGTAATGCTACTGATTCTGCACAGAAGAGTAGAAGGCCAACCAAGTCAGCTTCAAATCAGACAACTCACCCGAAGAACTGCCATCTTCCACAACACCACCATCATCCACCACCACCTTCACCTTCGCCACCAATCATGGCGGCTTCTGCAGCTGCGGCTATCGGCTCATCATTCTCTTCCTCCATCAACACTCTCAAGTGCCTTCGTTTATCCAAGAACTTGTCCTCTGAACCCCTCCTCAGAATTTCATCAAACCGCGTATTAGCGTCGGTCTCATCATCGCACTTGGTGGAACCACTTTCCTTTGATACCAATGTCAATAAGTTGTGGGTTTCAAGGGTTTCGGCGCAAGAAGAGCTTGTAGTGGTCGATGAGGCTGATGCTGGTTCAGTTGAAGAGAATGAGGAGGGAGAAAAGGAAGTGGTAGAAGAAGGAGAGGCTGAAGAAGTCTCTGTCCACACTAAGCTTTATTTTGGGAACTTGCCTTACAGTGTTGATAGCGCACAACTTGCAGCGATTATTCAGGATTATGGCAGCCCTGAACTCATTGAGGTTCTTTACCACAGGGAGACTGGAAAAAGCAGAGGTTTTGCATTTGTTACAATGAGTAGTGTCGAAGATTGCAATGCAGTGATAGAAAACCTTGATGGAAGGGAATACTTGGGTCGAACCTTGCGAGTAAACTTCTCTGACAAACCTAAACCGAAAGAACCCTTGTACCCTGAAACTGAAAATAAGCTTTTTGTTGGGAACTTGTCATGGTCTGTAACTTCTGAGAGTCTGACAGAAGCTTTTCAAGAATATGGAAATGTGGTTGGAGCTAGGGTCTTATATGATGGTGAAACAGGAAGATCCCGTGGCTATGGCTTTGTTTGCTATTCAACCAAATCAGAAATGGAAACTGCCCTTTCATCCATGAATGGAGTGGAACTCGAAGGACGAGCAATGCGTGTAAGCTTGGCTGAAGGGAAACGATCACAAAGTCAATAG 1692 0.4439 MNLVPPQRRSSRFLACSCFIVDVNQRSPAQSVSISSQNACFLRFFFKISSKNKWVLNLFIFLYPKVKVRQEQYQEDHRVIQDNNLKALQSLSLRVSPPPVRNQKGVSHPSSAEAPKCYVLHTPKPRVPVSEDLGACNLAADSSGLAAQEKDDNIDEDRVNIRASSVPPPRAVISSPDNDTMIGNKNRIKGRERLPGSKNYGVLQNRHAHCKVKSGNVTENPPNVRKPKKAADKSSNATDSAQKSRRPTKSASNQTTHPKNCHLPQHHHHPPPPSPSPPIMAASAAAAIGSSFSSSINTLKCLRLSKNLSSEPLLRISSNRVLASVSSSHLVEPLSFDTNVNKLWVSRVSAQEELVVVDEADAGSVEENEEGEKEVVEEGEAEEVSVHTKLYFGNLPYSVDSAQLAAIIQDYGSPELIEVLYHRETGKSRGFAFVTMSSVEDCNAVIENLDGREYLGRTLRVNFSDKPKPKEPLYPETENKLFVGNLSWSVTSESLTEAFQEYGNVVGARVLYDGETGRSRGYGFVCYSTKSEMETALSSMNGVELEGRAMRVSLAEGKRSQSQ 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0510 563 MobiDBLite consensus disorder prediction 234 260 - -
Alju06g0510 563 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 479 557 IPR000504 GO:0003723
Alju06g0510 563 FunFam 28 kDa ribonucleoprotein, chloroplastic 470 561 - -
Alju06g0510 563 SUPERFAMILY RNA-binding domain, RBD 387 470 IPR035979 GO:0003676
Alju06g0510 563 Gene3D - 470 563 IPR012677 -
Alju06g0510 563 SMART rrm1_1 389 462 IPR000504 GO:0003723
Alju06g0510 563 SMART rrm1_1 480 553 IPR000504 GO:0003723
Alju06g0510 563 MobiDBLite consensus disorder prediction 165 280 - -
Alju06g0510 563 PANTHER OS02G0815200 PROTEIN 245 559 - -
Alju06g0510 563 SUPERFAMILY RNA-binding domain, RBD 474 560 IPR035979 GO:0003676
Alju06g0510 563 CDD RRM2_NsCP33_like 480 555 - -
Alju06g0510 563 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 388 466 IPR000504 GO:0003723
Alju06g0510 563 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 481 550 IPR000504 GO:0003723
Alju06g0510 563 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 390 460 IPR000504 GO:0003723
Alju06g0510 563 FunFam 31 kDa ribonucleoprotein, chloroplastic 350 469 - -
Alju06g0510 563 Gene3D - 346 469 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0510 Alju-ChrAlju06 4184734 4191113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0510 388 558 Eukaryotic Initiation Factors Gene Family AT3G16380 31.579 5.65e-17 82.0