Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0490 ATGGATTCTCTTGTACCATTTCAAGATCTCAATCACTTACCCGACCTATCCGCCTGTATGCCTGGTGGCAGCACCAACCCTGTCAATGTTGGTGCCGGTGCCGATACCCCCACCATGTTGTTGGTACCGAAATTGGAACCGAAGCTCGAGCCGTTGGACGAGCCCTGTCTGAACCATCATCCCCAAGAACCCCAAGAAGTGGAGCAGACCATTTTTTCGAATCATGCCTTGGAAGCGCTCTCTCCGTCTCAGCGCAATAATTTCTTTGATAATAGCCTCGCTTCCGGTGACACACGAGGCGCATCGACGGAACAAGACAACTTGTATGCGGAGTTTTATCGATTTTCCGAGCAGTTTAGGACCATGTTAGCTGACAGTTTCAAAGCAAAGGGAGAAGTCGACGATTTGGGTCCAGATTCGCGGGCAATTGTTCCTGTGCCACAGGAAAATCAGGCTCCTCCGGTCGTCGTTACTCCGCGGCGGACCCCGCGTGTGAAGGAGCTGGTGAGGGTCAATGATCTTCGAATTGAAGATGACAGGTATTTCCGAGACATTATTAGAAGGACCAGGATGATTTATGATTCGTTGCGTATCTTGGCAACGGTGGAGGACGAGAAGAAATTCGATTTTTCTAGCGCCAAAAGGATGCGAGGTGATCTGAGGGCTGCCTCGTTAATGAGGGATCGTGGATTGTGGCTTAATCGTGATAAGCGTATAGTGGGTGCAATTCCAGGGATTTACATTGGCGATTTGTTCTTTTTTAGGATGGAACTTGTCGTGGTTGGGTTGCACGGTCAACCACAAGCTGGAATTGACTATCTTCCTTCCAGCCAGAGCACAAATGGGGAGCCGATAGCAACCAGTGTGATAGTTTCTGGTGGATATGAGGATGACGAAGACAGTGGTGATGTGATAATCTACACGGGTCATGGAGGCCAAGGCAAGAATATTACAAGGCAAGTTGTTCACCAGAAGTTGGAAGGAGGAAATCGTGCTATGGAAAGAAGCATGCATTATGGGATTGAAGTGCGTGTTATTCGAGGGTTTAAATACGAGGGAAGTGTTTCTAGTAAAATCTACGTTTATGATGGCTTGTATAGAATTGTTCAATGCTGGTTTGATGTGGGTAAATCTGGTTTTGGAGTTTACAAGTATAAACTTGTCAGAATTGAGGGCCAACCTGAAATGGGTAGTGCTATTCTTAAACTTGCTCAGACTCTTAGGACTAGTCCTTTGTCTACCAAGCCAATGGCTTATCTCAGTCTTGATATTTCTAACCAAAGGGAGGGGGTTCCTGTTCGTCTTTTTAATGACATAGATAGGGATCACGAGCCTCTTCGTTATGAATATCTTTCACGGACTAATTTTCCACCATTTGTATTTCATCTAAGTGGGAGTGCTACTGGTTGTGACTGCGTTGATGGCTGTACTGATAACTGTTTTTGTGCCATGAAAAATGGCGGCCAATTCCCTTATAATCTAAATGGGATTCTTGTGAGAGGGAAGCCTATTATTTTTGAATGTGGCCCTTTCTGTCGTTGTCCTCCACATTGCCGAAATCGAGTTACACAACATGGGCTGAGAAATAGAATGGAAGTATTTAGGTCAAGGGAAACAGGTTGGGGAGTGAGGTCGTTGGACCTTATTCATGCTGGTGCTTTTATCTGTGAATATGCTGGGGTTGTTCTGACTATGGAGCAAGCAAAAATTTTGTCAATGAATGGCGATTCATTGATATATCCGAGTCGGTTTTCTAATAGGCAAGCCTCAGAATGGGGTGATGTATCTCAAATTTATGCTGATTATGTGCGTCCTTCTTATCCATCAACTCCTCCTTTAGATTTTGCCATGGATGTGTCCACAATGAGGAATGTTGCTTGCTATATGAGCCACAGTTCAATTCCTAATGTGTCAGTTCAGTTTGTGCTGTATGATCACAATAATTTGATGTTCCCTCACCTTATGCTATTTGCATTGGAGAACATCCCTCCAATGAGGGAGCTCAGCCTTGATTATGGGGTGGCTGATGAATGGACAGGAAAGCTTTCTATATGTAACTGA 2061 0.4493 MDSLVPFQDLNHLPDLSACMPGGSTNPVNVGAGADTPTMLLVPKLEPKLEPLDEPCLNHHPQEPQEVEQTIFSNHALEALSPSQRNNFFDNSLASGDTRGASTEQDNLYAEFYRFSEQFRTMLADSFKAKGEVDDLGPDSRAIVPVPQENQAPPVVVTPRRTPRVKELVRVNDLRIEDDRYFRDIIRRTRMIYDSLRILATVEDEKKFDFSSAKRMRGDLRAASLMRDRGLWLNRDKRIVGAIPGIYIGDLFFFRMELVVVGLHGQPQAGIDYLPSSQSTNGEPIATSVIVSGGYEDDEDSGDVIIYTGHGGQGKNITRQVVHQKLEGGNRAMERSMHYGIEVRVIRGFKYEGSVSSKIYVYDGLYRIVQCWFDVGKSGFGVYKYKLVRIEGQPEMGSAILKLAQTLRTSPLSTKPMAYLSLDISNQREGVPVRLFNDIDRDHEPLRYEYLSRTNFPPFVFHLSGSATGCDCVDGCTDNCFCAMKNGGQFPYNLNGILVRGKPIIFECGPFCRCPPHCRNRVTQHGLRNRMEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAKILSMNGDSLIYPSRFSNRQASEWGDVSQIYADYVRPSYPSTPPLDFAMDVSTMRNVACYMSHSSIPNVSVQFVLYDHNNLMFPHLMLFALENIPPMRELSLDYGVADEWTGKLSICN 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0490 686 SMART preset_2 421 513 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Alju06g0490 686 Pfam Pre-SET motif 424 521 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Alju06g0490 686 Gene3D - 238 397 IPR036987 -
Alju06g0490 686 SMART G9a_1 236 393 IPR003105 -
Alju06g0490 686 ProSiteProfiles SET domain profile. 529 673 IPR001214 GO:0005515
Alju06g0490 686 SMART set_7 529 679 IPR001214 GO:0005515
Alju06g0490 686 Pfam SET domain 540 673 IPR001214 GO:0005515
Alju06g0490 686 SUPERFAMILY SET domain 412 685 IPR046341 -
Alju06g0490 686 Pfam SAD/SRA domain 240 393 IPR003105 -
Alju06g0490 686 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 165 674 - -
Alju06g0490 686 Gene3D SET domain 398 686 IPR046341 -
Alju06g0490 686 SUPERFAMILY PUA domain-like 222 402 IPR015947 -
Alju06g0490 686 ProSiteProfiles YDG domain profile. 241 389 IPR003105 -
Alju06g0490 686 ProSiteProfiles Pre-SET domain profile. 468 526 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Alju06g0490 686 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 91 686 IPR025794 GO:0016571
Alju06g0490 686 ProSiteProfiles PUA domain profile. 332 350 - -
Alju06g0490 686 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 223 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0490 Alju-ChrAlju06 4067429 4069489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0490 160 675 Su(var)3-9 homologs AT5G04940 39.887 1.05e-110 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Alju06g0490 SAD_SRA 3.2e-48 CL0178