LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju06g0489	ATGGCTGGTAACAACATGGGGTGGGGTATGAATATGTTAGAGGAAGAAGGTTGGAGGAAAGGTCCTTGGACTGCTGAAGAAGACAGATTGCTTATTGAATATGTCAGGCTTCATGGTGAAGGCAGATGGAACTCTGTCTCTAGGCTTGCAGGATTGAAAAGAAATGGCAAAAGCTGCAGATTGAGGTGGGTGAATTATTTGAGGCCTGACCTCAAGAAGGGTCAGATAACACCTCAGGAAGAGAGTATCATTCTTGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCCAGAAGCTTACCAGGAAGAACTGACAACGAGATTAAGAACTACTGGAGGACTCATTTCAAGAAGAAGGCGAAAAATTCTCCTGATTCTGCAGAAAAGGCGAAGAATCGCCTCATAAGGAGGCAACAATTTCAGCAGCAACAGCAGCAAATGCAGCAGCAGCAGCAGCAACAGCAACAACAGCAGCAACAGCAGCAGCAACTTCAATTCAACTTGGACATCAAAGGGATTATGGCTCTTCTGGAGGAAAATGATCATAGAGTGACTATGCCTTGTTTGTCTCAAATGAGGCAAGAAATGTATCAGAACACCATGGAAGAACAAGGCTGCTTATACTCTATGCTCAATGGCAATGCCTCTGTACCAGAACCTTCAAATGATGATACTTTCTGGGATGGCCTTTGGAACTTGGATGATTTTCATGGAAATTTCAGTGCAGCAGCAAGCAAAACCAATCTACACAATTTAGTTGCTCCCTTCTGCTAG	780	0.4436	MAGNNMGWGMNMLEEEGWRKGPWTAEEDRLLIEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKNSPDSAEKAKNRLIRRQQFQQQQQQMQQQQQQQQQQQQQQQQLQFNLDIKGIMALLEENDHRVTMPCLSQMRQEMYQNTMEEQGCLYSMLNGNASVPEPSNDDTFWDGLWNLDDFHGNFSAAASKTNLHNLVAPFC	259

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju06g0489	259	SUPERFAMILY	Homeodomain-like	17	114	IPR009057	-
	Alju06g0489	259	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	13	203	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Alju06g0489	259	CDD	SANT	77	118	IPR001005	-
	Alju06g0489	259	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	68	122	IPR017930	-
	Alju06g0489	259	Coils	Coil	139	169	-	-
	Alju06g0489	259	CDD	SANT	22	67	IPR001005	-
	Alju06g0489	259	ProSiteProfiles	Myb-like domain profile.	15	67	IPR001005	-
	Alju06g0489	259	SMART	sant	72	120	IPR001005	-
	Alju06g0489	259	SMART	sant	19	69	IPR001005	-
	Alju06g0489	259	Gene3D	-	20	72	-	-
	Alju06g0489	259	FunFam	Myb transcription factor	20	72	-	-
	Alju06g0489	259	FunFam	MYB-related transcription factor	77	121	-	-
	Alju06g0489	259	Gene3D	-	77	121	-	-
	Alju06g0489	259	ProSiteProfiles	Myb-like domain profile.	68	118	IPR001005	-
	Alju06g0489	259	Pfam	Myb-like DNA-binding domain	73	117	IPR001005	-
	Alju06g0489	259	Pfam	Myb-like DNA-binding domain	20	67	IPR001005	-
	Alju06g0489	259	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	19	67	IPR017930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju06g0489	Alju-ChrAlju06	4039728	4040817	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju06g0489	13	259	MYB Transcription Factor Family	AT4G13480	55.056	9.74e-88	259

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Alju06g0489		Myb_DNA-binding	1.6e-16	CL0123