Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0438 ATGGCAGAGACTTGGAAATATGTAAATGTCTGCTTGCTGGTGCTCGTAACGTTGTTCATTGGAGCCACGGCCAGAGTACAGATCTCTGAACTCAGGAATGTTGGAGCACAGAAATTGGAGAGCTTAACCAACACGTCAATGGCGGCCAGAGCCAAACAGGCTGAGGAATTGAATGAACGTGCTGCGGCTGCTGAGCCAGAGGAGGTTGTTTCCCATACTGTAATGACGATCCGAAACAGCACTGAAAGAAGAAAGTTGGGATTTTTCTCCTGTGGAACCGGTAATCCCATTGATGATTGCTGGCGTTGCGACCCCAACTGGCAACGTAACCGGAAGCGCCTGGCAGACTGCGGCATTGGGTTTGGTAGGAACGCCATTGGTGGCCGTGACGGTCGCTTCTATGTCGTCACTGACTCAGGAGACGATGACCCAGTCAACCCAAAGCCCGGCACCCTGAGGCACGCAGTGATCCAGGACAAGCCGCTGTGGATTGTATTCAAGCGTGACATGGTGATACAATTGAAGCAGGAGCTCATTGTGAACAGCTTCAAGACGATTGATGGACGAGGAGCAAATGTGCACATTGCTAATGGAGGCTGCATCACTATCCAGTATGTGACAAACGTGATAATCCACGGTCTTCACATCCATGACTGCAAACCCACAGGCAACGCCATGGTGAGAAGCACCCCAACACACTATGGTTGGAGGACAATGGCGGACGGTGACGCCGTTTCCATATTTGGATCCAGTCACATTTGGGTCGACCACAATTCCCTCTCTCACTGCGCTGATGGCCTCGTCGACGCTGTCATGGGCTCTACCGCCATTACAATCTCCAACAACCACTTCACCCACCACAATGAGGTGATTCTGCTGGGTCACAGTGACTCTTACACGAGGGACAAGCAAATGCAAGTGACCATCGCTTACAACCACTTTGGAGAGGGACTCATCCAGAGGATGCCAAGGTGCAGGCACGGGTATTTCCACGTAGTGAACAATGATTACACACACTGGGAGATGTATGCGATTGGAGGGAGTGCAAACCCCACCATCAACAGCCAGGGGAATAGATATAATGCTCCCCTCAACGCCTTCGCCAAGGAGGTGACCAAGCGAGTGGAGACTGCAGAAAGCCAGTGGAAGGGATGGAACTGGAGGTCGGAGGGAGATCTGATGCTGAACGGTGCTTATTTCACCCCCTCCGGCGCCGGAGCCTCAGCCAGCTATGCCAGAGCCTCCAGCTTAGGAGCTAAGTCCTCTTCCATGGTTGGCACCATCACTTCCAATGCAGGTGCACTTGGCTGCAAAAGAGGCCGTCAGTGCTAG 1332 0.527 MAETWKYVNVCLLVLVTLFIGATARVQISELRNVGAQKLESLTNTSMAARAKQAEELNERAAAAEPEEVVSHTVMTIRNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSTPTHYGWRTMADGDAVSIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVETAESQWKGWNWRSEGDLMLNGAYFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALGCKRGRQC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0438 443 FunFam Pectate lyase 94 436 - -
Alju06g0438 443 Gene3D - 94 436 IPR012334 -
Alju06g0438 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Alju06g0438 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Alju06g0438 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Alju06g0438 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Alju06g0438 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Alju06g0438 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Alju06g0438 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Alju06g0438 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Alju06g0438 443 Pfam Pectate lyase 175 358 IPR002022 -
Alju06g0438 443 SUPERFAMILY Pectin lyase-like 77 437 IPR011050 -
Alju06g0438 443 PANTHER PECTATE LYASE 18-RELATED 59 441 IPR045032 GO:0030570
Alju06g0438 443 SMART amb_all 169 366 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0438 Alju-ChrAlju06 3608836 3612645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0438 27 443 Polysaccharide Lyase AT4G13710 78.436 0.0 715